View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_71 (Length: 330)
Name: NF8180A_low_71
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 29561544 - 29561221
Alignment:
| Q |
1 |
agttaaggggacgaaatgtccaccggttccattggatacacagaaagagtttgagaagcgaatagtagtttgcagctcaaaggagaaaagtagtaatgtt |
100 |
Q |
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| T |
29561544 |
agttaaggggacgaaatgtccaccggttccattggatacacagaaagagtttgagaagcgaatagtaatttgcagctcaaaggaaaaaagtagcaatgtt |
29561445 |
T |
|
| Q |
101 |
acagaaaacagaaaacacagtgaggttttaaggaatggagaaagnnnnnnncatgctgctagaggtggattactggttccaaagcgaatgccgttccaag |
200 |
Q |
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| T |
29561444 |
acagaaaacagaaaacacggtgaggttttaaggaatggagaaagaaaaacacatgctgctagaggtggactactagttccaaaacgaatgccgttccaag |
29561345 |
T |
|
| Q |
201 |
acattggaaacaactcgtcgttgttgatgaggcagcaaaatggcaaagcagttctccctttgcattgccatctttcttcaaatgctgagaaaactaatcg |
300 |
Q |
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| T |
29561344 |
acattgggaacaactcttcattgttgacgaggcagcagaatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaacttatca |
29561245 |
T |
|
| Q |
301 |
cttgaatgaatgctgatcagttct |
324 |
Q |
| |
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|||||||||| |||||| |||||| |
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| T |
29561244 |
cttgaatgaacgctgattagttct |
29561221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 29557541 - 29557421
Alignment:
| Q |
202 |
cattggaaacaactcgtcgttgttgatgaggcagcaaaatggcaaagcagttctccctttgcattgccatctttcttcaaatgctgagaaaactaatcgc |
301 |
Q |
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||||||||| |||||||| |||||||||| ||| || | ||||||||||||| || |||||||||||||| ||||||||||||||||| ||||| | | | |
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| T |
29557541 |
cattggaaataactcgtcattgttgatgaagca-cagagtggcaaagcagttttctctttgcattgccatatttcttcaaatgctgag-aaacttagcac |
29557444 |
T |
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| Q |
302 |
ttgaatgaatgctgatcagttct |
324 |
Q |
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|||||||||||||||| |||||| |
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| T |
29557443 |
ttgaatgaatgctgataagttct |
29557421 |
T |
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