View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_74 (Length: 327)
Name: NF8180A_low_74
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_74 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 268
Target Start/End: Original strand, 45414371 - 45414627
Alignment:
| Q |
2 |
catagattgattattgaa-gtgaaaaagatgcaaaggcacgccacgtgacatttagaagagaaggacaccaac-atcaatcatgagaattagtatagttg |
99 |
Q |
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| T |
45414371 |
catagattgattattgaaagtgaaaaagatgcaaaggcatgccacgtgacatttagaagagaaggacaccaacaatcaatcatgagaattagtatagttg |
45414470 |
T |
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| Q |
100 |
catcatcaggacacactactaataaagtaaccacaacttcaatttaatttaattagtacaattaattaacaacaaataaaaatatataaagacgtaggt- |
198 |
Q |
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| T |
45414471 |
---catcaggacacactactaataaagtaaccaccacttcaattt--------------aattaattaacaacaaataaaaatatataaagacgtaggtg |
45414553 |
T |
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| Q |
199 |
---gacagacagagttgtgtgaaa-cgtttgatttgattcgtaccgatgggcgtttgtgtttggctaatcatca |
268 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45414554 |
acagacagacagagttgtgtgaaaccgtttgatttgattcgtaccgatgggcgtttgtgtttggctaatcatca |
45414627 |
T |
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