View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_77 (Length: 316)
Name: NF8180A_low_77
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 13608750 - 13609047
Alignment:
| Q |
6 |
aagtttactaacaaaactttacctgtttcattgaacgaataattttcaaggattcgactgaatttttcaattaattacagtagcactttgtcattatatt |
105 |
Q |
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| T |
13608750 |
aagtttactaacaaaactttacctgtttcattgaacgaataattttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatt |
13608849 |
T |
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| Q |
106 |
tgatgtttactgtcatgatttttggttctaggattgtttaatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatc |
205 |
Q |
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| T |
13608850 |
tgatgtttactgtcatgatttttggttcttggattgttttatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatc |
13608949 |
T |
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| Q |
206 |
ctctggtcttctaggccagaatatgcacagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaacttcaactttacctggcaatat |
303 |
Q |
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| T |
13608950 |
ctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaacttcaactttacctggcaatat |
13609047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 123 - 297
Target Start/End: Complemental strand, 6472857 - 6472683
Alignment:
| Q |
123 |
atttttggttctaggattgtttaatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatcctctggtcttctaggcc |
222 |
Q |
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| T |
6472857 |
atttttggctcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcatgtgatgatttggaatttctattctctggtcttttaggtc |
6472758 |
T |
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| Q |
223 |
agaatatgcacagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaacttcaactttacctgg |
297 |
Q |
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| T |
6472757 |
acaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataagactgaaactttaactgg |
6472683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 31244857 - 31244988
Alignment:
| Q |
164 |
tttttgtttgtggttgtcatgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcacagattggaaaaattattaaaaagttaacat |
263 |
Q |
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| T |
31244857 |
tttttgtttggggttgttgtgtgatgatttggtatttctatcctctggtcttttaggccacaatatgcagagattggaaaaattattaaagaggtaacat |
31244956 |
T |
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| Q |
264 |
gcttattgggaaacaaaacttcaactttacct |
295 |
Q |
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| T |
31244957 |
gcttattgagtcacaaatcttcaactttacct |
31244988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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