View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_78 (Length: 316)
Name: NF8180A_low_78
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 4904972 - 4904743
Alignment:
| Q |
11 |
attgattggatttctagaaaaatttctctaatcagaagattgtat-ttggtctacacaaatattatatggtttggctctcccttatgcattaatatttct |
109 |
Q |
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| T |
4904972 |
attgattggatgtctagaaaa-tttctctaatcagaagattgtatattggtctgcacaaatattatatggtttggctctcccttatgcattaat--ttct |
4904876 |
T |
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| Q |
110 |
ctaatcagaataatatatcctttattgactggatgattcatagtctagaaaatcttagaaatgaaaccctaaatattatagccactataacgtatgaaat |
209 |
Q |
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| T |
4904875 |
ctaatcagaataatatatcctttattgattggatgattaatagtctagaaaatcttagaaatgaaaccctaaatattatagccgctataacgtatgaaat |
4904776 |
T |
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| Q |
210 |
ctgg----acagcaagaaacaaatcaaacaatg |
238 |
Q |
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| T |
4904775 |
ctggatatatagcaagaaacaaatcaaacaatg |
4904743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 4924285 - 4924056
Alignment:
| Q |
11 |
attgattggatttctagaaaaatttctctaatcagaagattgtat-ttggtctacacaaatattatatggtttggctctcccttatgcattaatatttct |
109 |
Q |
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| T |
4924285 |
attgattggatgtctagaaaa-tttctctaatcagaagattgtatattggtctgcacaaatattatatggtttggctctcccttatgcattaat--ttct |
4924189 |
T |
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| Q |
110 |
ctaatcagaataatatatcctttattgactggatgattcatagtctagaaaatcttagaaatgaaaccctaaatattatagccactataacgtatgaaat |
209 |
Q |
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| T |
4924188 |
ctaatcagaataatatatcctttattgattggatgattgatagtctagaaaatcttagaaatgaaaccctaaatattatagccgctataacgtatgaaat |
4924089 |
T |
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| Q |
210 |
ctgg----acagcaagaaacaaatcaaacaatg |
238 |
Q |
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| T |
4924088 |
ctggatatatagcaagaaacaaatcaaacaatg |
4924056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 4883771 - 4883653
Alignment:
| Q |
7 |
ctttattgattggatttctagaaaaatttctctaatcagaagattgtatttggtctacacaaatattatatggtttggctctcccttatgcattaatatt |
106 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
4883771 |
ctttattgattggatgtctagaaaaatttctctaatcagaagattgtatttggtctactcaaatattatatggtttggctctcccttctgcattaatatt |
4883672 |
T |
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| Q |
107 |
tctctaatcagaataatat |
125 |
Q |
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| T |
4883671 |
tctctaatcagaataatat |
4883653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 4881778 - 4881665
Alignment:
| Q |
125 |
tatcctttattgactggatgattcatagtctagaaaatcttagaaatgaaaccctaaatattatagccactataacgtatgaaatctggacagcaagaaa |
224 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4881778 |
tatcctttattgattggatgattcatagtctagaaaatcttggaaatgaaaccctaaatattatagccgctataacgtatgaaatctggacagcaagaaa |
4881679 |
T |
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| Q |
225 |
caaatcaaacaatg |
238 |
Q |
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| T |
4881678 |
caaatcaaacaatg |
4881665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 4881482 - 4881423
Alignment:
| Q |
235 |
aatgtaagttcaccacatagaaagtctctcttgcatttaatataacctctactttttctg |
294 |
Q |
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| T |
4881482 |
aatgtaagttcaccacataaaaagtctctcttgcactgaatataacctctactttttctg |
4881423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 4646535 - 4646631
Alignment:
| Q |
7 |
ctttattgattggatttctagaaaaatttctctaatcagaagattgt-atttggtctacacaaatattatatggtttggctctcccttatgcattaat |
103 |
Q |
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|||| |||||||||| ||| ||||| ||||||||||||||||||||| | | ||||| ||||||||| |||||||||||| ||||||| ||| ||||| |
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| T |
4646535 |
cttttttgattggatgtctggaaaa-tttctctaatcagaagattgtaaatcggtctgcacaaatatgatatggtttggcgctcccttgtgctttaat |
4646631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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