View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_8 (Length: 515)
Name: NF8180A_low_8
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 511
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
| Q |
338 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
436 |
Q |
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| T |
12933811 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
12933909 |
T |
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| Q |
437 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
511 |
Q |
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| T |
12933910 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
12933984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
361 |
catggagatttggaagaggagatttatatggagcaacc |
398 |
Q |
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| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 511
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
| Q |
338 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
436 |
Q |
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| T |
28608794 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt |
28608696 |
T |
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| Q |
437 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
511 |
Q |
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| T |
28608695 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
28608621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 488
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
| Q |
338 |
tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt |
436 |
Q |
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| T |
14177081 |
tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt |
14177179 |
T |
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| Q |
437 |
gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta |
488 |
Q |
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| T |
14177180 |
gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta |
14177231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
| Q |
346 |
aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca |
399 |
Q |
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| T |
20706182 |
aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca |
20706234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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