View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_83 (Length: 310)
Name: NF8180A_low_83
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 417687 - 417978
Alignment:
| Q |
1 |
tcatgaactcaccagtattccttcacaaccataattaataccaaacaattcaattacaaaaatgaaaagaagattaataattaatatctgacactgacat |
100 |
Q |
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| T |
417687 |
tcatgaattcaccagtattccttcacaaccataattaataccaaacaattcaattacaaaaataaaaagaagattaataattaatatctgacactgacat |
417786 |
T |
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| Q |
101 |
catgacaatagatttagagttaatnnnnnnnntcaactgattaccataaaccaaatttggcctcgtagaattttgctgataacagaatcccaatggccat |
200 |
Q |
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| T |
417787 |
catgacaatagatttagagttaataaaaaaaatcaactgattaccataaaccaaatttggcctcgtagaattttgctgataacagaatcccaatggccat |
417886 |
T |
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| Q |
201 |
gaacttattatttaatttccattgtatgtgtacattgacaatattatgccccaccattaggcgtgtcaggagcatattacactttgtctgtg |
292 |
Q |
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| T |
417887 |
gaacttattatttaatttccattgtatgtgtacattgacaatattatgccccaccattaggcgtgtcaggagcatattacactttgtctgtg |
417978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 418464 - 418718
Alignment:
| Q |
12 |
ccagtattccttcacaaccataattaataccaaacaattcaattacaaaaatgaaaagaagattaataattaatatctgacactgacatcatgacaatag |
111 |
Q |
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| T |
418464 |
ccagaattcctccacaaccataattagtaccaaacaagtcaattacaacaataatgagaagattaatatttagaatctgacactaacatcatgataatac |
418563 |
T |
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| Q |
112 |
attta--gagttaatnnnnnnnntcaactgattaccataaaccaaatttggcctcgtagaattttgctgataacagaatcccaatggccatgaacttatt |
209 |
Q |
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| T |
418564 |
atttactgagttaataaaaaaacacaactcattgccaaaaacaaaatttcaccttgtagaattttgttgataatagaatcccaatgggcgtgaac----t |
418659 |
T |
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| Q |
210 |
atttaatttccattgtatgtgtacattgacaatattatgccccaccattaggcgtgtca |
268 |
Q |
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| T |
418660 |
cgctaatttcaattgtacatgtacgttgacagtattatgccccaccattaggcatgtca |
418718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 418968 - 419218
Alignment:
| Q |
14 |
agtattccttcacaaccataattaataccaaacaattcaattacaaaaatgaaaagaagattaataattaatatctgacactgacatcatgacaatagat |
113 |
Q |
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| T |
418968 |
agtattccttcatggccataattagtacaaaacaattcaattacaaaaatattgagaagattactgattag-atctgacactaacatcatgataatttat |
419066 |
T |
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| Q |
114 |
tta--gagttaatnnnnnnnntcaactgattaccataaaccaaatttggcctcgtagaattttgctgataacagaatcccaatggccatgaacttattat |
211 |
Q |
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| T |
419067 |
ttattgagttgataaaaaaa-tcaactgattaccaaaaaccaaatttcaccttgtagaattttgccgagaacagaaacccaatggccatgaactt----g |
419161 |
T |
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| Q |
212 |
ttaatttccattgtatgtgtacattgacaatattatgccccaccattaggcgtgtca |
268 |
Q |
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| T |
419162 |
ctaatttcaattgaatatgtactttgacaatattatgccccatgattaagcgtgtca |
419218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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