View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8180A_low_87 (Length: 307)

Name: NF8180A_low_87
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8180A_low_87
NF8180A_low_87
[»] chr4 (16 HSPs)
chr4 (1-263)||(22340129-22340392)
chr4 (1-263)||(29123847-29124110)
chr4 (1-132)||(17838943-17839079)
chr4 (1-249)||(15705969-15706217)
chr4 (1-132)||(4303611-4303747)
chr4 (2-62)||(3621321-3621381)
chr4 (1-132)||(12915468-12915604)
chr4 (2-117)||(8110610-8110730)
chr4 (1-57)||(17469533-17469589)
chr4 (1-57)||(34994483-34994539)
chr4 (1-57)||(36950958-36951014)
chr4 (1-57)||(50694163-50694219)
chr4 (27-62)||(53584945-53584980)
chr4 (2-68)||(12290538-12290604)
chr4 (3-57)||(29192726-29192780)
chr4 (162-249)||(4303773-4303860)
[»] chr3 (13 HSPs)
chr3 (1-263)||(23602813-23603076)
chr3 (162-263)||(26130578-26130679)
chr3 (3-132)||(8594934-8595068)
chr3 (1-68)||(42462466-42462533)
chr3 (2-132)||(48547231-48547366)
chr3 (1-117)||(8542197-8542318)
chr3 (1-60)||(52196041-52196100)
chr3 (1-62)||(42459700-42459761)
chr3 (1-57)||(16663733-16663789)
chr3 (1-68)||(30737234-30737301)
chr3 (1-57)||(39633241-39633297)
chr3 (80-137)||(26130501-26130558)
chr3 (174-249)||(8594821-8594896)
[»] chr1 (4 HSPs)
chr1 (1-129)||(49369447-49369580)
chr1 (1-132)||(5556944-5557080)
chr1 (162-249)||(49369337-49369424)
chr1 (11-62)||(45757435-45757486)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-132)||(58805-58941)
[»] chr7 (8 HSPs)
chr7 (204-263)||(22542872-22542931)
chr7 (1-117)||(40892173-40892294)
chr7 (8-69)||(21607983-21608044)
chr7 (1-57)||(22866157-22866213)
chr7 (1-68)||(27278348-27278415)
chr7 (8-57)||(586541-586590)
chr7 (1-57)||(45649570-45649626)
chr7 (1-57)||(47553046-47553102)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-117)||(73990-74111)
[»] chr8 (4 HSPs)
chr8 (1-132)||(31423624-31423760)
chr8 (1-62)||(29529926-29529987)
chr8 (80-132)||(9098342-9098393)
chr8 (1-57)||(10802090-10802146)
[»] chr2 (3 HSPs)
chr2 (2-69)||(38938217-38938284)
chr2 (1-57)||(22298669-22298725)
chr2 (1-57)||(33937184-33937240)
[»] chr5 (6 HSPs)
chr5 (1-74)||(11265765-11265838)
chr5 (1-62)||(29150057-29150118)
chr5 (9-69)||(27891443-27891503)
chr5 (1-57)||(38931526-38931582)
chr5 (1-57)||(29322550-29322606)
chr5 (1-57)||(8895141-8895197)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-62)||(225133-225194)
[»] chr6 (4 HSPs)
chr6 (1-62)||(7218759-7218820)
chr6 (1-57)||(5391926-5391982)
chr6 (1-69)||(14223578-14223646)
chr6 (2-62)||(28605297-28605357)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 22340392 - 22340129
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||     ||||||||||||||||    
T  22340392 tcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaaagcaaacttcatcacattcagttttgattatcccttttggagacaa 22340293  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtccgttgttgnnnnnnnnnnnnggctatttattctagcctttctgtactgtaactaactgttttc 195  Q
    ||| | ||| |||||||||||| |||||||||||||  |||||||            |||    | |||||||||| ||||| |||||||||||||||||    
T  22340292 aatcctttatgttgtttacagactgccatgtaatgtatgttgttgtttttgttttttggc----tgttctagccttactgtattgtaactaactgttttc 22340197  T
Q  196 agtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 263  Q
    ||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  22340196 agtcccttttgacacaccttgtgctttgagggactgtttgcgttttaatatattattcttagtttctt 22340129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 29123847 - 29124110
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||     ||||||||||||||||    
T  29123847 tcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcactttcagttttgattatcccttttggagacaa 29123946  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtccgttgttgnnnnnnnnnnnnggctatttattctagcctttctgtactgtaactaactgttttc 195  Q
    ||| | ||| ||||||| ||||||||| ||||||||| | ||||             |||    |  ||||||||| ||||| |||||||||||||||||    
T  29123947 aatcctttatgttgtttgcagattgccttgtaatgtctgatgttctttttgttttttggc----tgctctagccttactgtattgtaactaactgttttc 29124042  T
Q  196 agtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 263  Q
    ||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29124043 agttccttttggcacaccttatgctttgagggactgtttgtgttttaatatattattcttaatttctt 29124110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 17838943 - 17839079
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||  || | ||||     ||||||||||||||||    
T  17838943 tcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggatgaaagcaaacttcatcatgttcacttttgattatcccttttggagacaa 17839042  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtc 132  Q
    ||| ||||| |||||||||||| |||| |||||||||    
T  17839043 aatcccttatgttgtttacagactgccttgtaatgtc 17839079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15705969 - 15706217
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac-----atttagtttttcccttttggagacaa 95  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||| ||| ||     |||| | || ||||||||||||||||    
T  15705969 tcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaa 15706068  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtccgttgttgnnnnnnnnnnnnggctatttattctagcctttctgtactgtaactaactgttttc 195  Q
    ||| | ||  |||||||||||  |||| ||||||||| ||| |||            |||| ||||   ||||||| ||||| ||||||||||| |||||    
T  15706069 aatccattttgttgtttacaggctgccttgtaatgtctgtttttgtttttgtttcctggct-ttta---tagccttactgtattgtaactaactattttc 15706164  T
Q  196 agtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatatt 249  Q
    ||| ||||||||||| |||||| | |||||||||||| ||| ||||||||||||    
T  15706165 agttccttttggcacaccttgtac-ttgagggaccgtatgtattttaatatatt 15706217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4303611 - 4303747
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac-----atttagtttttcccttttggagacaa 95  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||| ||| ||     |||| | || ||||||||||||||||    
T  4303611 tcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaa 4303710  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtc 132  Q
    ||| | ||  |||||||||||  |||| |||||||||    
T  4303711 aatccattttgttgtttacaggctgccttgtaatgtc 4303747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 3621381 - 3621321
Alignment:
Q  2 catcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||||| ||||||||||||    
T  3621381 catcttgaagctctttttgaaagggttaaacttcagacttattggtggttgaaagcaaact 3621321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 12915604 - 12915468
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||| ||||||||||| |||| ||||||||||||||| | ||||||| |||||||||||| ||| |||||   ||||     || |||||||||||||    
T  12915604 tcatctagaagctcttatggaaagggttaaacttcaaacgtattggtggttgaaagcaaacttcattacattcgtttttgactatcacttttggagacaa 12915505  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtc 132  Q
    ||| | ||  |||||||||| | || |||||||||||    
T  12915504 aatcctttttgttgtttacaaactgtcatgtaatgtc 12915468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 8110730 - 8110610
Alignment:
Q  2 catcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac-----atttagtttttcccttttggagacaaa 96  Q
    ||||| ||||||||| |||||| |||||||||||| |||| ||||||| |||||||| ||| ||||||      ||| | || |||||||||||||||||    
T  8110730 catctcgaagctctttttgaaagggttaaacttcagacttattggtggctgaaagcagacttcatcactttcgcttttgattatcccttttggagacaaa 8110631  T
Q  97 attccttaagttgtttacaga 117  Q
    || | |||  |||||||||||    
T  8110630 atcctttacattgtttacaga 8110610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17469533 - 17469589
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||    
T  17469533 tcatcttgaagctcttcttgaaaggattaaacttcaaacattttggtggctgaaagc 17469589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34994539 - 34994483
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||    
T  34994539 tcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 34994483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36951014 - 36950958
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||    
T  36951014 tcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 36950958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 50694163 - 50694219
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    ||||||||||| |||| |||||| ||||||||||||||| ||||||||| |||||||    
T  50694163 tcatcttgaagttcttcttgaaagggttaaacttcaaacgttttggtggctgaaagc 50694219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 53584980 - 53584945
Alignment:
Q  27 ttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    |||||||||||||||| |||||||||||||||||||    
T  53584980 ttaaacttcaaactttctggtggatgaaagcaaact 53584945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 12290604 - 12290538
Alignment:
Q  2 catcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatca 68  Q
    ||||| |||||||||   |||| |||||||||||| |||| ||||||| |||||||||||| |||||    
T  12290604 catctcgaagctctttcggaaagggttaaacttcagacttattggtggttgaaagcaaacttcatca 12290538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 29192726 - 29192780
Alignment:
Q  3 atcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||  |||||| ||||||||| ||||| ||||||||| |||||||    
T  29192726 atcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagc 29192780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 4303773 - 4303860
Alignment:
Q  162 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 249  Q
    |||||||||| |||||||||||||||||  |||||||  |||||||||   ||||||| ||||||||  || |||| ||||||||||||    
T  4303773 ttctagccttactgtactgtaactaacttatttcagtttcttttggcaaatcttgtgc-ttgagggattgtatgtgtttttaatatatt 4303860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 23603076 - 23602813
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||     ||||||||||||||||    
T  23603076 tcatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaaagcaaactccatcaccttcagttttgattatcccttttggagacaa 23602977  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtccgttgttgnnnnnnnnnnnnggctatttattctagcctttctgtactgtaactaactgttttc 195  Q
    ||| | ||| |||||||||||| ||  |||||||||| |||| ||            |||  |||    ||||||||| ||| |||||||||||||||||    
T  23602976 aatcctttatgttgtttacagactgttatgtaatgtctgttgatgtttttgttttttggcagttt----tagcctttccgtattgtaactaactgttttc 23602881  T
Q  196 agtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 263  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  23602880 agtcccttttggcacaccttgtgctttgaggaactgtttgtgttttaatatattattcttagtttctt 23602813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 26130578 - 26130679
Alignment:
Q  162 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttc 261  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26130578 ttctagcctttctgtattgtaactaactgctttcagtcccttttggcacgccttgtgctttgagggactgtttgtgttttaatatatttttcttagtttc 26130677  T
Q  262 tt 263  Q
    ||    
T  26130678 tt 26130679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 8595068 - 8594934
Alignment:
Q  3 atcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac-----atttagtttttcccttttggagacaaaa 97  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||| ||| ||     |||| | || ||||||||||||||||||    
T  8595068 atcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaa 8594969  T
Q  98 ttccttaagttgtttacagattgccatgtaatgtc 132  Q
    | | ||  ||||| |||||  |||| |||||||||    
T  8594968 tcctttttgttgtatacaggctgccttgtaatgtc 8594934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 42462533 - 42462466
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatca 68  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||| |||||    
T  42462533 tcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggttgaaagctaacttcatca 42462466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 48547366 - 48547231
Alignment:
Q  2 catcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac-----atttagtttttcccttttggagacaaa 96  Q
    ||||| ||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| ||||||      ||| | || ||| |||||||||||||    
T  48547366 catctcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcacgttcgcttttgattatcctttttggagacaaa 48547267  T
Q  97 attccttaagttgtttacagattgccatgtaatgtc 132  Q
    || | |||  ||||||||||| || |||||||||||    
T  48547266 atccgttacattgtttacagactgtcatgtaatgtc 48547231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 8542318 - 8542197
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac-----atttagtttttcccttttggagacaa 95  Q
    |||||| ||||||||| |||||| ||||||||||| ||| ||||||||| ||||||| |||| ||||||      ||| | || ||||||||||| ||||    
T  8542318 tcatctggaagctcttcttgaaagggttaaacttcgaacgttttggtggttgaaagctaactacatcacgttcgctttcgattatcccttttggacacaa 8542219  T
Q  96 aattccttaagttgtttacaga 117  Q
    ||| ||||| ||||||||||||    
T  8542218 aatcccttatgttgtttacaga 8542197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52196100 - 52196041
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaa 60  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| ||||||||||    
T  52196100 tcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcaaa 52196041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42459700 - 42459761
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    |||||||||||||||||| | || ||||||||||||||| | ||||||| ||||||||||||    
T  42459700 tcatcttgaagctcttatggtaagggttaaacttcaaacgtattggtggttgaaagcaaact 42459761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16663789 - 16663733
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||    
T  16663789 tcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 16663733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30737301 - 30737234
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatca 68  Q
    |||||||||||||||| |||||| ||||||||||||||| | ||||||| ||||| | |||| |||||    
T  30737301 tcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttgaaatcgaacttcatca 30737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39633241 - 39633297
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||  |||||| ||||||||| ||||| ||||||||| |||||||    
T  39633241 tcatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagc 39633297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 26130501 - 26130558
Alignment:
Q  80 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtccgttg 137  Q
    ||||||||||||||||||| | ||| |||||||||||| ||  |||||||||| ||||    
T  26130501 tcccttttggagacaaaatcctttatgttgtttacagactgttatgtaatgtctgttg 26130558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 8594896 - 8594821
Alignment:
Q  174 tgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 249  Q
    |||| ||||||||||| |||| || | |||||| ||| |||||||| ||||||||| ||||||| ||||||||||||    
T  8594896 tgtattgtaactaactatttttaggctcttttgacacaccttgtgc-ttgagggactgtttgtgtttttaatatatt 8594821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 49369580 - 49369447
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||| |  |||| ||||     ||||||||||||||||    
T  49369580 tcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcaaacttcattatgtttacttttgattatcccttttggagacaa 49369481  T
Q  96 aattccttaagttgtttacagattgccatgtaat 129  Q
    ||| | ||| |||||||||||| |||| ||||||    
T  49369480 aatccattatgttgtttacagactgccttgtaat 49369447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 5557080 - 5556944
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||| ||||||||| |||||| |||||||||||||||||  |||||| |||||||||||| |||||| ||   ||||     ||||||||||||||||    
T  5557080 tcatctcgaagctctttttgaaagggttaaacttcaaacttactggtggttgaaagcaaacttcatcacgttcgcttttgactatcccttttggagacaa 5556981  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtc 132  Q
    ||| | |||  ||||||||||| ||  ||||||||||    
T  5556980 aatccgttacattgtttacagactgtaatgtaatgtc 5556944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 49369424 - 49369337
Alignment:
Q  162 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 249  Q
    |||||||||| ||||| ||||||||||| ||||||||  |||||||||| |||| ||| || |||||| || |||| ||||||||||||    
T  49369424 ttctagccttactgtattgtaactaactattttcagtttcttttggcacaccttatgc-ttaagggactgtatgtgtttttaatatatt 49369337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 45757486 - 45757435
Alignment:
Q  11 gctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    |||||| |||||| |||||| |||||||| ||||||||| ||||||||||||    
T  45757486 gctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaact 45757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 58805 - 58941
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||||||||||||| |||||| ||||||||||||||| | ||||||| |||||||||||| |||||| ||   ||||     ||||||||||||||||    
T  58805 tcatcttgaagctcttcttgaaagggttaaacttcaaacatattggtggttgaaagcaaacttcatcactttcgcttttgactatcccttttggagacaa 58904  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtc 132  Q
    ||| ||||| |||||||||||| || | |||||||||    
T  58905 aatcccttatgttgtttacagactgtcttgtaatgtc 58941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 22542931 - 22542872
Alignment:
Q  204 ttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 263  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22542931 ttggcacaccttgtgctttgagggactgtttgtgttttaatatattattcttagtttctt 22542872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 40892173 - 40892294
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||| ||||||||| |||||| ||||||||||||||| ||||||||| ||||||| |||| |||||| ||   ||||     ||||||||||||||||    
T  40892173 tcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaa 40892272  T
Q  96 aattccttaagttgtttacaga 117  Q
    ||| ||||| ||||||||||||    
T  40892273 aatcccttatgttgtttacaga 40892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 21608044 - 21607983
Alignment:
Q  8 gaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac 69  Q
    ||||||||| |||||| ||||||||||||||| ||||||||| ||||||| |||| ||||||    
T  21608044 gaagctctttttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcac 21607983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22866157 - 22866213
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||    
T  22866157 tcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 22866213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 27278415 - 27278348
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatca 68  Q
    |||||||||||||||| || ||| ||||||| ||||| | | ||||||| |||||||||||| |||||    
T  27278415 tcatcttgaagctcttcttaaaagggttaaatttcaatcgtattggtggttgaaagcaaacttcatca 27278348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 586590 - 586541
Alignment:
Q  8 gaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||| |||| |||||| ||||||||||||||| ||||||||| |||||||    
T  586590 gaagttcttcttgaaagggttaaacttcaaacgttttggtggttgaaagc 586541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45649570 - 45649626
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||| ||||||| |||||| | ||||||||||||  ||||||||| |||||||    
T  45649570 tcatcttggagctcttcttgaaaggattaaacttcaaatgttttggtggctgaaagc 45649626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 47553102 - 47553046
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    ||||||||| |||||  |||||| | ||||||||||||| ||||||||| |||||||    
T  47553102 tcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggctgaaagc 47553046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 74111 - 73990
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||| ||||||||| |||||| ||||||||||||||| ||||||||| ||||||| |||| |||||| ||   ||||     ||||||||||||||||    
T  74111 tcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaa 74012  T
Q  96 aattccttaagttgtttacaga 117  Q
    ||| ||||| ||||||||||||    
T  74011 aatcccttatgttgtttacaga 73990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31423624 - 31423760
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacatttagtttt-----tcccttttggagacaa 95  Q
    |||||| ||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| || ||| ||   ||||     ||||||||||||||||    
T  31423624 tcatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcagcacgttcgcttttgactatcccttttggagacaa 31423723  T
Q  96 aattccttaagttgtttacagattgccatgtaatgtc 132  Q
    ||| | ||| |||||||||||| |  |||||||||||    
T  31423724 aatccattatgttgtttacagactatcatgtaatgtc 31423760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29529987 - 29529926
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    |||||| || |||||| |||||| |||||| |||||||| ||||||||| ||||||||||||    
T  29529987 tcatctagatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaact 29529926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 9098342 - 9098393
Alignment:
Q  80 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtc 132  Q
    |||||||||||||||||| ||||||  ||||||||||| || |||||||||||    
T  9098342 tcccttttggagacaaaa-tccttacattgtttacagactgtcatgtaatgtc 9098393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10802090 - 10802146
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    ||||||||| |||||  |||||| | ||||||||||||| ||||||||| |||||||    
T  10802090 tcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggctgaaagc 10802146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 38938284 - 38938217
Alignment:
Q  2 catcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac 69  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| || |||||||||||| ||||||    
T  38938284 catcttgaagctcttcttgaaagggttaaacttcaaactttttggcggttgaaagcaaacttcatcac 38938217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22298725 - 22298669
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||  |||||| ||||||||| ||||| | ||||||| |||||||    
T  22298725 tcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttgaaagc 22298669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33937184 - 33937240
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||  |||||| ||||||||| ||||| | ||||||| |||||||    
T  33937184 tcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttgaaagc 33937240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11265838 - 11265765
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcacattta 74  Q
    |||||||||||||||  |||||| ||||||||||||||||| ||||||| ||||||||| || |||||| ||||    
T  11265838 tcatcttgaagctctccttgaaagggttaaacttcaaacttattggtggttgaaagcaaccttcatcaccttta 11265765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29150118 - 29150057
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    ||||||||||||||||||||||| ||||||||||||||| | || |||| ||||||||||||    
T  29150118 tcatcttgaagctcttattgaaagggttaaacttcaaacgtattcgtggttgaaagcaaact 29150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 27891503 - 27891443
Alignment:
Q  9 aagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac 69  Q
    |||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| ||||||    
T  27891503 aagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcac 27891443  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38931582 - 38931526
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||    
T  38931582 tcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagc 38931526  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29322606 - 29322550
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||    
T  29322606 tcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 29322550  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8895197 - 8895141
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    ||||||| |||||||| |||||| |||||||||||||||  ||| |||| |||||||    
T  8895197 tcatcttaaagctcttcttgaaagggttaaacttcaaacggtttagtggttgaaagc 8895141  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 225133 - 225194
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    |||||||||||||||| | |||||||||||||||||||| | ||||||  ||||||||||||    
T  225133 tcatcttgaagctcttttggaaaaggttaaacttcaaacgtattggtgattgaaagcaaact 225194  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7218759 - 7218820
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    |||||||||||||||| | |||||||||||||||||| | | ||||||| ||||||||||||    
T  7218759 tcatcttgaagctcttttggaaaaggttaaacttcaagcgtattggtggttgaaagcaaact 7218820  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5391926 - 5391982
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagc 57  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||    
T  5391926 tcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 5391982  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 14223578 - 14223646
Alignment:
Q  1 tcatcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaactccatcac 69  Q
    |||||| ||||||||||| |||| ||||||||||||||| | ||||||| | |||||||||| ||||||    
T  14223578 tcatctggaagctcttatggaaacggttaaacttcaaacgtattggtggttaaaagcaaacttcatcac 14223646  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 28605297 - 28605357
Alignment:
Q  2 catcttgaagctcttattgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 62  Q
    ||||||||||||||| |||||| |||||||||||| | || |||| || ||||||||||||    
T  28605297 catcttgaagctctttttgaaagggttaaacttcagaattattggcggttgaaagcaaact 28605357  T

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