View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_89 (Length: 306)
Name: NF8180A_low_89
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 22925973 - 22926253
Alignment:
| Q |
9 |
ctccttccgtcccggtatataaacaccttttatatttaaaaataaatttttaatcaaaatggtgtttagatatagagaccgagggactaagtgattaggt |
108 |
Q |
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|||||| |||||| |||| ||||||||||||||||||||| ||||||||||| | ||||||||| |||||| ||||||| | ||||||| ||||||||| |
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| T |
22925973 |
ctccttacgtccctgtatgtaaacaccttttatatttaaagataaatttttagttaaaatggtgcttagatccagagaccaaaggactaaatgattaggt |
22926072 |
T |
|
| Q |
109 |
ggcatttatttatgttgttaacgcacacgttgaagaaacgtggtctgtctttctttcttcaccgattataaatggtcatacttcgatagtcttcattcaa |
208 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22926073 |
ggcatttatttatgttgttaacgcttaggttgaagaaacgtggtctgtctttctttcttcaccgattataaatggtcatacttcgatagtcttcattcaa |
22926172 |
T |
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| Q |
209 |
tcctttcactccatcta-tcaaagtagtatcccaaatcataattcaaagctattttaagctaattaaggtaagaaatatttcatatt |
294 |
Q |
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||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22926173 |
tcctttcactccatctacacagagtagtatccca------aattcaaagctattttaagctaattaaggtaagaaatatttcatatt |
22926253 |
T |
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