View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_9 (Length: 499)
Name: NF8180A_low_9
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Original strand, 6917429 - 6917908
Alignment:
| Q |
20 |
cagttctgcaacaggaaacaggtactatccggagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactgtccagaaaggcaagtt |
119 |
Q |
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| T |
6917429 |
cagttctgcaacagggaacaggtactatccggagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactgtccagaatggcaagtt |
6917528 |
T |
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| Q |
120 |
ccaggccatcaagattgagcgcggcgaggttgattccgaaacatataggttctgattttccttttgcttgttgtttgagcacactcaatataaaatgcta |
219 |
Q |
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| T |
6917529 |
ccaggccatcaagattgagcgcggcgaggttgatttcgaaacatataggttctgattttccatttgcttgttgtttgagcacactcaatataaaatgcta |
6917628 |
T |
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| Q |
220 |
aatgcacagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatt |
319 |
Q |
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| T |
6917629 |
aatgcacagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatt |
6917728 |
T |
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| Q |
320 |
tgatgactgttcttggcacacatgcatgctgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaa |
419 |
Q |
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| T |
6917729 |
tgatgactgttcttggcacatatgcatgatgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaa |
6917828 |
T |
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| Q |
420 |
agtcaaatggcttatgtcatgagaacaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaag |
499 |
Q |
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| T |
6917829 |
agtcaaatggcttatgtcatgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaag |
6917908 |
T |
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