View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_92 (Length: 305)
Name: NF8180A_low_92
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_92 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 27608213 - 27608508
Alignment:
| Q |
14 |
agaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaataaatacatatatttttcaaggaacacagacatctgcaa |
113 |
Q |
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| T |
27608213 |
agaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaataaatacatatatttttcaaggaacacagacatctgcaa |
27608312 |
T |
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| Q |
114 |
tgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttcctagaaggatgtaac---ca |
210 |
Q |
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| T |
27608313 |
tgttaccatctgatttttttgaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttcctagaaggatgtaaccagca |
27608412 |
T |
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| Q |
211 |
gcatagtttccttttgcat-nnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctcaccgttgagctga |
305 |
Q |
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| T |
27608413 |
gcatagtttccttttgcataaataaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctcaccgttgagctga |
27608508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 34496669 - 34496960
Alignment:
| Q |
14 |
agaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaataaatacatatatttttcaaggaacacagacatctgcaa |
113 |
Q |
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| T |
34496669 |
agaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaataaatacatatatttttcaaggaacacagacatctgcaa |
34496768 |
T |
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| Q |
114 |
tgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttcctagaaggatgtaaccagca |
213 |
Q |
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| T |
34496769 |
tgttaccattggatttttttgaagaattacatgtattaattcaaccagcaaagggaaaatccaatgaaaattagtttttcctagaaggatgtaaccaaca |
34496868 |
T |
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| Q |
214 |
tagtttccttttgcatnnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctcaccgttgagctga |
305 |
Q |
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| T |
34496869 |
tagtttccttttgcataaaaaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctcaccgttgagctga |
34496960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 31506037 - 31505749
Alignment:
| Q |
11 |
catagaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaataaatacatatatttttcaaggaacacagacatctg |
110 |
Q |
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| T |
31506037 |
catagaagagaaaaatacatacaacaaaaagccgccaatttcatagtgcaatggataa---atataaatacatatttttttcaaggaacacagacatctg |
31505941 |
T |
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| Q |
111 |
caatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttcctagaaggatgtaacca |
210 |
Q |
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| T |
31505940 |
caatgttaccatctgattttacc-aagaatcacgtgtatcaattcaaccgacaaagggaaaatcaaatgaaaattggttttt-ctagaaggatgtaacca |
31505843 |
T |
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| Q |
211 |
gcatagtttccttttgcatnnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctcaccgttgagctga |
305 |
Q |
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| T |
31505842 |
gcatagttgccttttgcat-aacagactacaatagaatagtttaaagcatcaattaacactaggtaacaaggaaatgttctcaccgttgagctga |
31505749 |
T |
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