View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_94 (Length: 301)
Name: NF8180A_low_94
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 7440760 - 7440462
Alignment:
| Q |
1 |
gccttctttaatgttttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataatttataacgcttgatttcctcaattcactctagc |
100 |
Q |
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||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7440760 |
gccttatttaatgtcttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataatttataacacttgatttcctcaattcactctagc |
7440661 |
T |
|
| Q |
101 |
catt----taacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattgg |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7440660 |
cattaatttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattgg |
7440561 |
T |
|
| Q |
197 |
tgctagaaggaggattgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacgattccattacaaaagaaagtctaacagtcttag |
295 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7440560 |
tgctagaaggaggattgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacgattccattacaaaagaaagtataacagtcttag |
7440462 |
T |
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