View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180A_low_95 (Length: 301)
Name: NF8180A_low_95
Description: NF8180A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180A_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 38737704 - 38737399
Alignment:
| Q |
1 |
tcaaactgtaaataaaagacggtatctatttgttaaattgaactgaaataagaatacaagtataataaagaagcaatacgtagtatcatttttcattggt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38737704 |
tcaaactgtaaataaaagacagtatctatttgttaaattgaactgaaataagaatacaagtataataaagaagcaatacgtagtatcatttttcattggt |
38737605 |
T |
|
| Q |
101 |
ccattacaagagagagagnnnnnnnn---------gaacttatacctcatcagtgttctcattcaagtttttgagataatcaaccaacctagacattcga |
191 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38737604 |
ccattacaagagagagagagaaaaaaaaaaaaaaagaacttatacctcatcagtgttctcattcaagtttttgagataatcaaccaacctagacattcga |
38737505 |
T |
|
| Q |
192 |
ccactacgggaactcttgccgttgctaccaccaccactgccatatcttgtgttactccgaaaaccaccccttccccaagtaagctttctagcttttgtca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38737504 |
ccactacgggaactcttgccgttgctaccaccaccactgccatatcttgtgttactccgaaaaccaccccttccccaagtaagctttctagcttttgtca |
38737405 |
T |
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| Q |
292 |
ccagcc |
297 |
Q |
| |
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|||||| |
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| T |
38737404 |
ccagcc |
38737399 |
T |
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