View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8180_high_1 (Length: 264)
Name: NF8180_high_1
Description: NF8180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 619217 - 618993
Alignment:
| Q |
1 |
agggtaaaatttttgtgattctaatattttgtttaccacatttctatcttacatgttatcataatttaatctgaaaatgttctggttttggtttattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
619217 |
agggtaaaatttttgtgattctaatattttgtttaccacatttctatcttacatgttatcataatttaatctgaaaatgttctggttttggtttattttt |
619118 |
T |
|
| Q |
101 |
tcattcagggcaattagtggtaaaataaa-agagacatgctctacctccttatgaaggttcacggggtaagctaaaactcataaatgtaatggtttgctg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
619117 |
tcattcagggcaattagtggtaaaataaatagagacacactctgcctccttatgaaggttcacggggtaagctaaaactcataaatgtaatggtttgctc |
619018 |
T |
|
| Q |
200 |
ctctattttagatcaacatagttat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
619017 |
ctctattttagatcaacatagttat |
618993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35408587 - 35408811
Alignment:
| Q |
1 |
agggtaaaatttttgtgattctaatattttgtttaccacatttctatcttacatgttatcataatttaatctgaaaatgttctggttttggtttattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408587 |
agggtaaaatttttgtgattctaatattttgtttaccacatttctatcttacatgttatcataatttaatctgaaaatgttctggttttggtttattttt |
35408686 |
T |
|
| Q |
101 |
tcattcagggcaattagtggtaaaataaa-agagacatgctctacctccttatgaaggttcacggggtaagctaaaactcataaatgtaatggtttgctg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35408687 |
tcattcagggcaattagtggtaaaataaatagagacacactctgcctccttatgaaggttcacggggtaagctaaaactcataaatttaatggtttgctc |
35408786 |
T |
|
| Q |
200 |
ctctattttagatcaacatagttat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35408787 |
ctctattttagatcaacatagttat |
35408811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34588018 - 34588242
Alignment:
| Q |
1 |
agggtaaaatttttgtgattctaatattttgtttaccacatttctatcttacatgttatcataatttaatctgaaaatgttctggttttggtttattttt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34588018 |
agggtaaaaattttgtgattctaatattttgtttaccacatttctatcttacatgttatcataatttaatctgaaaatgttctggttttggtttattttt |
34588117 |
T |
|
| Q |
101 |
tcattcagggcaattagtggtaaaataaa-agagacatgctctacctccttatgaaggttcacggggtaagctaaaactcataaatgtaatggtttgctg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34588118 |
tcattcagggcaattagtggtaaaataaatagagacacactctgcctccttatgaaggttcacggggtaagctaaaactcataaatgtaatggtttgctc |
34588217 |
T |
|
| Q |
200 |
ctctattttagatcaacatagttat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34588218 |
ctctattttagatcaacatagttat |
34588242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25099969 - 25100192
Alignment:
| Q |
1 |
agggtaaaatttttgtgattctaatattttgtttaccacatttctatcttacatgttatcataatttaatctgaaaatgttctggttttggtttattttt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| || || ||||||||||||| | |
|
|
| T |
25099969 |
agggtaaattttttgtgattctaatattttgtttacaacgtttctatctctcatgttatcataatttaatctgaaaatattttgtttttggtttatttct |
25100068 |
T |
|
| Q |
101 |
tcattcagggcaattagtggtaaaataaa-agagacatgctctacctccttatgaaggttcacggggtaagctaaaactcataaatgtaatggtttgctg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25100069 |
tcattcagggcaattagtggtaaaataaatagagacacactctgcctccttgtgaaggttcatggggtaagccaaaactcataaatgtaatggtttgctg |
25100168 |
T |
|
| Q |
200 |
ctctattttagatcaacatagtta |
223 |
Q |
| |
|
|| ||||||| ||||||||||||| |
|
|
| T |
25100169 |
ctgtattttaaatcaacatagtta |
25100192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University