View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180_low_1 (Length: 731)
Name: NF8180_low_1
Description: NF8180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 132 - 713
Target Start/End: Complemental strand, 926560 - 925969
Alignment:
| Q |
132 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattacttcact |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
926560 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcagccttgaaatccattacttcact |
926461 |
T |
|
| Q |
232 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttccnnnnnnncatctccatgactttat----aaatagcctaaaaataaacacttgttga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
926460 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttcctttttttcatctccatgactttatttataaatagcctaaaaataaacacttgttga |
926361 |
T |
|
| Q |
328 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgccaaagaaga---gatcatcgatttgaacc |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
926360 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgccaaagaagaagagatcatcgatttgaacc |
926261 |
T |
|
| Q |
425 |
aaatcacactccgatcctttcatctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggccaagttctggggggaaccttacaccag |
524 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
926260 |
aaatcacactccgatcctttaatctttctgaccttgatgatgtaatggtgtggcagactgatgaaaaagtggccaagttctggggggaaccttacaccag |
926161 |
T |
|
| Q |
525 |
caaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtat---ctacgttgcaaagcaatatgccataacgatcatgctattgggtgtattaag |
621 |
Q |
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| T |
926160 |
caaagaccaaggcatcaacttcattgaaaatatagaaagtgaatatctactacaatgcaaagcaatatgccataatgatcatgttattgggtgtattaag |
926061 |
T |
|
| Q |
622 |
ttgtcctccagttcactttatgacaagagtaggaacagatgtgcagaaattgggtatgttctagcctctaaatattggggtaaagggattgc |
713 |
Q |
| |
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|||| ||| ||||||||| |||| ||||| ||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
926060 |
ttgttctcgagttcacttcatgataagagcaggtacaaatgtgcagaaattggttatgttctagcctctaaatactggggtaaagggattgc |
925969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 398 - 713
Target Start/End: Complemental strand, 935740 - 935425
Alignment:
| Q |
398 |
ccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggc |
497 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||| | ||||||||||| ||||||||||||||||| |
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| T |
935740 |
ccaaagaagagatcattgatttgaaccaaatcacactccgatcttttaatctttctgacctcgatgatctcatggtgtggcacactgatgaaaaagtggc |
935641 |
T |
|
| Q |
498 |
caagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgccataac |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935640 |
caagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgccataac |
935541 |
T |
|
| Q |
598 |
gatcatgctattgggtgtattaagttgtcctccagttcactttatgacaagagtaggaacagatgtgcagaaattgggtatgttctagcctctaaatatt |
697 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935540 |
gatcatgctattgggtgtattaagttgtcctccagttcactttatgacaagagtaggaacagatgtgcagaaattgggtatgttctagcctctaaatatt |
935441 |
T |
|
| Q |
698 |
ggggtaaagggattgc |
713 |
Q |
| |
|
|||||||||||||||| |
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| T |
935440 |
ggggtaaagggattgc |
935425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 364 - 611
Target Start/End: Complemental strand, 928641 - 928391
Alignment:
| Q |
364 |
atggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatg |
463 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
928641 |
atggaggaaacttttatttcttcaaaaccatgtggcaaagaagaaatcattgatttgaaccaaatcacactccgatcctttaatctttctgaccttgatg |
928542 |
T |
|
| Q |
464 |
atgtaatggtgtggcatactgatgaaaaagtggccaagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggc |
560 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| | |||||||||||||| ||| ||| | |
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| T |
928541 |
atgtaatggtgtggcatactgatgaaaaggtggccaagttctgctcttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtataga |
928442 |
T |
|
| Q |
561 |
aggcaagtatctacgttgcaaagcaatatgccataacgatcatgctattgg |
611 |
Q |
| |
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| |||||| ||| ||||||||||||||||| ||| |||| ||||||||| |
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| T |
928441 |
aagcaagtttctttgttgcaaagcaatatgcattaatgatcgtgctattgg |
928391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 927129 - 927018
Alignment:
| Q |
16 |
tatagattagagaccaccgtaattgatgcagtgatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
927129 |
tatagattagagaccaccgtaattgatgcagtgatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaac |
927030 |
T |
|
| Q |
116 |
aactaaaatcac |
127 |
Q |
| |
|
|||||||||||| |
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| T |
927029 |
aactaaaatcac |
927018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 361 - 611
Target Start/End: Complemental strand, 939569 - 939316
Alignment:
| Q |
361 |
gttatggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttg |
460 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| ||| ||| ||| | | ||| |||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
939569 |
gttatggaggaaacttttatttcttccaaaccaagtggcaatgaacaaagcattgatttgaaccaaatcacactccgaccttttcatctttctgaccttg |
939470 |
T |
|
| Q |
461 |
atgatgtaatggtgtggcatactgatgaaaaagtggccaagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatat |
557 |
Q |
| |
|
||||| | ||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||| ||||||| |
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| T |
939469 |
atgatctcatggtatggagaactgatgaaaaagtggccaagttctgctcttgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatat |
939370 |
T |
|
| Q |
558 |
ggcaggcaagtatctacgttgcaaagcaatatgccataacgatcatgctattgg |
611 |
Q |
| |
|
|| ||||| |||| | |||||||||||||||| |||| ||| ||||||||| |
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| T |
939369 |
accaaacaagtttctatggtgcaaagcaatatgccttaacaatcgtgctattgg |
939316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 372 - 713
Target Start/End: Complemental strand, 924278 - 923934
Alignment:
| Q |
372 |
aacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgatgtaatg |
471 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||||| || ||| | | |||||||||||||||| || || |||||||||||||||||||| | ||| |
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|
| T |
924278 |
aacttctatttcttccaaaccaggtgccaaagaagagagaattgatctaacccaaatcacactccgaccccttaatctttctgaccttgatgatctcatg |
924179 |
T |
|
| Q |
472 |
gtgtggcatactgatgaaaaagtggccaagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagt |
568 |
Q |
| |
|
| ||| |||||||||||||||||||||||||| |||||| ||||||||||| || | |||||||||||||| ||||||| || ||||| |
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| T |
924178 |
atatggacaactgatgaaaaagtggccaagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctaccaagt |
924079 |
T |
|
| Q |
569 |
atctacgttgcaaagcaatatgccataacgatcatgctattgggtgtattaagttgtcctccagttcactttatgacaagagtaggaacagatgtgcaga |
668 |
Q |
| |
|
|||| | ||||||||||||||| || |||| ||| ||||||||| || | ||||| ||||||| | ||| || ||||||| ||||||||| |
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|
| T |
924078 |
ttctatggtgcaaagcaatatgcatcaatgatcgtgcaattgggtgtgtttctctatcctcgagttcacctggtgataaatccaggaacaaatgtgcaga |
923979 |
T |
|
| Q |
669 |
aattgggtatgttctagcctctaaatattggggtaaagggattgc |
713 |
Q |
| |
|
| |||| |||||||||| |||||||||||||||||||||| |||| |
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|
| T |
923978 |
acttggctatgttctaggctctaaatattggggtaaaggggttgc |
923934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 924555 - 924473
Alignment:
| Q |
144 |
ttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattact |
226 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
924555 |
ttcataggcttggatccattttaatgcatattcaagtcaaccatggcaggcagagacataaagcagccttgaaatcccttact |
924473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 46648477 - 46648422
Alignment:
| Q |
447 |
tctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggccaagt |
502 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |
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|
| T |
46648477 |
tctttctgatcttgatgatgttttggtgtggactagtgatgaaaaagtggccaagt |
46648422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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