View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180_low_2 (Length: 426)
Name: NF8180_low_2
Description: NF8180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 410
Target Start/End: Original strand, 39481201 - 39481592
Alignment:
| Q |
21 |
actcgagctcatactcagttaactgagctgcgaaaccgtccattgcggaacggtaagagtagagaaggcgagaagaagggtcttcatcagatgaaatggt |
120 |
Q |
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| T |
39481201 |
actcgagctcatactcagttaactgagctgcgaaaccgtccattgcggaacggtaagagtagagaaggcgagaagaagggtcttcatcagatgaaatggt |
39481300 |
T |
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| Q |
121 |
ttgttgtataaatgaaaggtgccattcaagattggaggtgaacaaagacttggttgtgccatgagggtgtaattgaacaatataagttccaagagtctgt |
220 |
Q |
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| T |
39481301 |
ttgttgtataaatgaaaggtgccattcaagattggaggtgaacaaagacttggttgtgccatgagggtgtaattgaacaatataagttccaagagtctgt |
39481400 |
T |
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| Q |
221 |
gcatggatggtgagaatgaggaggaaaagggtgaggaaaaagagttgaaatttggattccatt-ggtttttgttgttgtagtaatagaagaatgtgttgt |
319 |
Q |
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| T |
39481401 |
gcatggatgttgagaatgaggaggaaaagggtgaggaaaaagagttgaaatttggattccattgggtttttgttgttgtagtagtagaagaatgtgttgt |
39481500 |
T |
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| Q |
320 |
a-ggttgcatgattttgtggtggaattggaggggtatttgaaggtgttgaggaagaattcaaatgtgaactagctaagcgtttgttgatgtc |
410 |
Q |
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| T |
39481501 |
agggttgcatgattttgtggtggaattggaggggtatttgaaggtgttgaggaagaattcaaatgtgaactaggtaagcgtttgttgatgtc |
39481592 |
T |
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