View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8180_low_5 (Length: 236)
Name: NF8180_low_5
Description: NF8180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8180_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 15186179 - 15185982
Alignment:
| Q |
20 |
gatttaaggaaaggaatacagagactttcatacttattgcaaacagttaaagagtaaaagacagtcactttcttcgagttttttggattatgaagctaac |
119 |
Q |
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| T |
15186179 |
gatttaaggaaaggaata-atagactttcatacttattgcaaacagttaaagagtaaaagacagtcactttcttcgagttttttggattatgaagctaac |
15186081 |
T |
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| Q |
120 |
actttttagacagatcctatttgtcttaacagtggaagccattttctgtactaannnnnnnggctgttacaataactctgactgaatgaggataactcg |
218 |
Q |
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| T |
15186080 |
actttttagacagatcctatttgtcttaacagtggaagccattttctgtactaatttttttggctgttacaataactctgactgaatgaggataactcg |
15185982 |
T |
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