View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8181_high_3 (Length: 372)

Name: NF8181_high_3
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8181_high_3
NF8181_high_3
[»] chr1 (13 HSPs)
chr1 (1-250)||(10032075-10032325)
chr1 (149-231)||(34528925-34529008)
chr1 (163-231)||(18332707-18332775)
chr1 (148-250)||(41574286-41574388)
chr1 (171-233)||(19054389-19054451)
chr1 (169-233)||(16816238-16816302)
chr1 (163-245)||(10433201-10433283)
chr1 (148-224)||(12629262-12629339)
chr1 (148-223)||(34879930-34880006)
chr1 (148-233)||(43021739-43021826)
chr1 (268-325)||(8753449-8753511)
chr1 (171-212)||(25538784-25538825)
chr1 (169-214)||(41917088-41917133)
[»] chr6 (18 HSPs)
chr6 (271-372)||(15951883-15951985)
chr6 (148-248)||(20898950-20899051)
chr6 (174-233)||(24617737-24617796)
chr6 (148-243)||(24373503-24373599)
chr6 (163-248)||(3056941-3057026)
chr6 (151-230)||(9344469-9344549)
chr6 (155-230)||(14641431-14641507)
chr6 (163-233)||(9351128-9351198)
chr6 (163-233)||(26592526-26592596)
chr6 (170-233)||(841308-841372)
chr6 (163-222)||(11650843-11650902)
chr6 (171-233)||(8483636-8483698)
chr6 (171-233)||(13575013-13575075)
chr6 (171-233)||(13577552-13577614)
chr6 (162-232)||(15141909-15141979)
chr6 (204-250)||(15952010-15952056)
chr6 (148-245)||(20589622-20589719)
chr6 (163-212)||(12435958-12436007)
[»] chr2 (7 HSPs)
chr2 (280-369)||(13437897-13437988)
chr2 (163-233)||(40926465-40926535)
chr2 (148-233)||(13619098-13619183)
chr2 (163-230)||(28522856-28522923)
chr2 (148-233)||(17377510-17377596)
chr2 (163-248)||(17151299-17151384)
chr2 (148-212)||(24270842-24270907)
[»] chr8 (10 HSPs)
chr8 (148-248)||(16290844-16290945)
chr8 (148-224)||(16325633-16325708)
chr8 (169-248)||(26657677-26657756)
chr8 (163-250)||(21499327-21499416)
chr8 (148-233)||(29840849-29840935)
chr8 (163-232)||(44351-44420)
chr8 (155-230)||(24184758-24184834)
chr8 (163-230)||(24317404-24317470)
chr8 (173-230)||(19742056-19742113)
chr8 (163-227)||(26393352-26393416)
[»] scaffold0009 (1 HSPs)
scaffold0009 (148-249)||(1482-1584)
[»] chr3 (8 HSPs)
chr3 (148-231)||(25760008-25760092)
chr3 (148-250)||(26953938-26954041)
chr3 (171-233)||(10623239-10623301)
chr3 (163-230)||(1051324-1051391)
chr3 (163-212)||(16309690-16309739)
chr3 (163-212)||(18490684-18490733)
chr3 (163-212)||(19826437-19826486)
chr3 (148-212)||(26430245-26430310)
[»] chr5 (4 HSPs)
chr5 (163-233)||(2259401-2259471)
chr5 (155-231)||(21711544-21711621)
chr5 (169-231)||(15614747-15614809)
chr5 (196-250)||(24122975-24123029)
[»] chr4 (7 HSPs)
chr4 (155-248)||(44673664-44673758)
chr4 (148-250)||(11415962-11416065)
chr4 (171-233)||(34657917-34657979)
chr4 (148-248)||(8667087-8667187)
chr4 (148-229)||(33040582-33040664)
chr4 (171-233)||(37005905-37005967)
chr4 (170-231)||(19904619-19904680)
[»] scaffold0068 (1 HSPs)
scaffold0068 (155-231)||(2289-2366)
[»] chr7 (9 HSPs)
chr7 (154-250)||(1537945-1538042)
chr7 (148-250)||(1633292-1633395)
chr7 (163-212)||(1862352-1862401)
chr7 (169-218)||(4407428-4407477)
chr7 (169-212)||(4463455-4463498)
chr7 (169-219)||(11842765-11842815)
chr7 (163-212)||(980923-980972)
chr7 (162-231)||(12163398-12163467)
chr7 (169-218)||(28937358-28937407)
[»] scaffold0437 (1 HSPs)
scaffold0437 (155-230)||(11409-11485)
[»] scaffold0291 (2 HSPs)
scaffold0291 (1-45)||(15742-15786)
scaffold0291 (148-230)||(15557-15640)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-45)||(99464-99508)
[»] scaffold0911 (1 HSPs)
scaffold0911 (148-230)||(2226-2309)
[»] scaffold0886 (1 HSPs)
scaffold0886 (163-230)||(2786-2853)
[»] scaffold0176 (2 HSPs)
scaffold0176 (149-250)||(26441-26542)
scaffold0176 (86-131)||(26376-26423)
[»] scaffold0257 (1 HSPs)
scaffold0257 (196-245)||(16233-16282)
[»] scaffold0045 (1 HSPs)
scaffold0045 (169-233)||(80345-80409)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 10032325 - 10032075
Alignment:
Q  1 tatggatttcttttgtgacaaaattggtttgcctaactacaggtttcctttctctcgtgtagtctatttgcgttttgttatttactt---attttcttct 97  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  |||||||| ||||| |||| || |||| ||   |||||||||     
T  10032325 tatggatttcttttgtgacaaagttggtttgcctaactacaggtttccttactctgttgtagtctgtttgcattttattttttattttttattttcttcc 10032226  T
Q  98 g--ggttttgatctagtcccccctcttcttgtatatannnnnnnnnnnnnnnaataatattttagagttggcagcataggatggaggttttctggggtac 195  Q
    |  |||||||  ||||||||||||||||||||| |||               |||||||||||||||||||| |||||||||| || ||||| ||||||     
T  10032225 gagggttttggcctagtcccccctcttcttgtacatatttttcctttt----aataatattttagagttggcggcataggatgaagtttttccggggtat 10032130  T
Q  196 caacctagttgggatgttggtgttttctcttgatgcatatcccttctccttgcct 250  Q
    ||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||    
T  10032129 caacctagttgggatgtcggtgtttcctcttgatgcctgtcccttctccttgcct 10032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 34529008 - 34528925
Alignment:
Q  149 ataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    |||| ||||||||||| ||| ||||||||||||||||| | ||||| |||||||||||||||||| | ||||| ||||||||||    
T  34529008 ataaaattttagagtttggcggcataggatggaggtttcccggggtgccaacctagttgggatgtcgctgtttcctcttgatgc 34528925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 18332775 - 18332707
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    ||||| |||||||||||||||| || ||||| |||||||||||||||||| | ||||||||||| ||||    
T  18332775 ttggcggcataggatggaggttctccggggtgccaacctagttgggatgtcgatgttttctcttaatgc 18332707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 41574388 - 41574286
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||| ||||||||||| ||| ||||||||||||||||| | ||| |  ||||||||||||||||||||||||| || ||||||  | ||| ||||||||    
T  41574388 aataaaattttagagtttggcggcataggatggaggtttccaggg-tgtcaacctagttgggatgttggtgtttccttttgatgtctgtcctttctcctt 41574290  T
Q  247 gcct 250  Q
    ||||    
T  41574289 gcct 41574286  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 19054451 - 19054389
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||||||||||  | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  19054451 ataggatggaggttccccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcat 19054389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 16816302 - 16816238
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||||||||||||  | | ||  |||||||||||||||||||||||||| ||||||||||||    
T  16816302 gcataggatggaggttccccgaggcgccaacctagttgggatgttggtgtttcctcttgatgcat 16816238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 10433201 - 10433283
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcct 245  Q
    ||||||||||| |||||||||| || | ||| | |||||||||||||||| |||| || |||||||||| | ||| |||||||    
T  10433201 ttggcagcatatgatggaggttctccgaggtgcaaacctagttgggatgtcggtgcttcctcttgatgcttgtcctttctcct 10433283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 12629339 - 12629262
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctc 224  Q
    ||||| ||||||||||| ||| |||||||| |||||||| | ||| | |||| ||||||||||||| |||||||||||    
T  12629339 aataaaattttagagtttggcggcataggacggaggtttcccgggatgccaatctagttgggatgtcggtgttttctc 12629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 34880006 - 34879930
Alignment:
Q  148 aataatattttagagttgg-cagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttct 223  Q
    ||||| ||||||||||||  || ||||||| |||||||||  ||||| ||||||||||| |||||| ||||||||||    
T  34880006 aataaaattttagagttgtacaacataggacggaggtttttcggggtgccaacctagttaggatgtcggtgttttct 34879930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 43021826 - 43021739
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttct-ggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |  ||||| ||||||||  |||  ||| ||||||||||||||||||||    
T  43021826 aataaaattttagagtttggcggcataggatggaggtttccccggggtgccaacctaagtggtttgtcggtgttttctcttgatgcat 43021739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 8753449 - 8753511
Alignment:
Q  268 tagaagagagcattttt---ataggtagtgcataagttttc--atatatgaaaaatggtgtta 325  Q
    |||||||||||||||||   |||||||||||| ||||||||  ||||||| ||||||||||||    
T  8753449 tagaagagagcattttttatataggtagtgcacaagttttcatatatatgtaaaatggtgtta 8753511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 25538825 - 25538784
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    |||||||||||||| ||||| || ||||||||||||||||||    
T  25538825 ataggatggaggttctctggagtgccaacctagttgggatgt 25538784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 41917088 - 41917133
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttg 214  Q
    ||||||||||| |||| || ||||| ||||||||||||||||||||    
T  41917088 gcataggatgggggttctccggggtgccaacctagttgggatgttg 41917133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 15951985 - 15951883
Alignment:
Q  271 aagagagcatt-tttataggtagtgcataagttttcatatatgaaaaatggtgttattggtcttcaaattaaaaggaacgtaaccactatataaaagtat 369  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15951985 aagagagcattatttataggtagtgcataagttttcatatatgaaaaatgttgttattggtcttcaaattaaaaggaacgtaaccactatataaaagtat 15951886  T
Q  370 tat 372  Q
    |||    
T  15951885 tat 15951883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 20898950 - 20899051
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||  |||||||||| | |||  |||||||    
T  20898950 aataatattttagagtttggcagcatagggtggaggtttcctggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcctt 20899049  T
Q  247 gc 248  Q
    ||    
T  20899050 gc 20899051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 24617796 - 24617737
Alignment:
Q  174 ggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  24617796 ggatggaggttttccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcat 24617737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 24373503 - 24373599
Alignment:
Q  148 aataatattttagag-ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctc 243  Q
    ||||||||||| ||| ||||| |||||||||||||||| ||  |||||||||||||||||||||||  ||| || ||| |||||||| ||| |||||    
T  24373503 aataatatttttgagattggcggcataggatggaggttctccagggtaccaacctagttgggatgtcagtgcttcctcgtgatgcatgtcctttctc 24373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 3056941 - 3057026
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctccttgc 248  Q
    ||||| |||||||||||||||||   ||||||||||| |||||||||||| | |||| ||||||||||| | |||  |||||||||    
T  3056941 ttggcggcataggatggaggtttctcggggtaccaacttagttgggatgtcgatgttgtctcttgatgcctgtccactctccttgc 3057026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 9344469 - 9344549
Alignment:
Q  151 aatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    |||||||| ||||| || |||||||| ||||||||||  || || |||||||||||||||||| | |||||||||||||||    
T  9344469 aatatttttgagtttggaagcatagggtggaggttttgcggagtgccaacctagttgggatgtcgttgttttctcttgatg 9344549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 14641431 - 14641507
Alignment:
Q  155 ttttagag-ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    |||||||| ||||| |||||||||||||| || | ||||| |||||||||||||||||| ||||||  |||||||||    
T  14641431 ttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatg 14641507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 9351198 - 9351128
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||| |||||||||||||||||   ||||| |||||||||||||||||| | |||| ||| |||||||||    
T  9351198 ttggcggcataggatggaggtttctcggggtgccaacctagttgggatgtcgatgttgtctattgatgcat 9351128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 26592596 - 26592526
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||| ||||||||||||||||| |   ||||||||||||||||| ||||  ||||| |||||||||||||    
T  26592596 ttggcggcataggatggaggtttcccaaggtaccaacctagttggaatgtcagtgttctctcttgatgcat 26592526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 841372 - 841308
Alignment:
Q  170 cataggatggaggttttct-ggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    |||||||||||||||  || ||||| ||||| |||||||||||| ||||||||||| ||||||||    
T  841372 cataggatggaggttccctcggggtgccaacttagttgggatgtcggtgttttctcatgatgcat 841308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 11650843 - 11650902
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttc 222  Q
    ||||| ||||| ||||||||||  || |||| |||||||||||||||||| |||||||||    
T  11650843 ttggcggcataagatggaggttccctagggtgccaacctagttgggatgtaggtgttttc 11650902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 8483698 - 8483636
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||| ||||||  | ||||| ||||||||||||||||||  |||||| ||||||||||||    
T  8483698 ataggatagaggttccccggggtgccaacctagttgggatgtccgtgtttcctcttgatgcat 8483636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 13575013 - 13575075
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    |||||||| |||||| | || || |||||||||||||||||| ||||||  ||||||||||||    
T  13575013 ataggatgaaggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcat 13575075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 13577552 - 13577614
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    |||||||| |||||| | || || |||||||||||||||||| ||||||  ||||||||||||    
T  13577552 ataggatgaaggtttcccggagtgccaacctagttgggatgtcggtgttccctcttgatgcat 13577614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 15141979 - 15141909
Alignment:
Q  162 gttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgca 232  Q
    |||||| ||| | |||| |||||| | ||| | |||||||||||||||||| ||||||| |||||||||||    
T  15141979 gttggcggcagacgatgcaggtttcccgggttgccaacctagttgggatgtcggtgtttcctcttgatgca 15141909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 15952056 - 15952010
Alignment:
Q  204 ttgggatgttggtgttttctcttgatgcatatcccttctccttgcct 250  Q
    ||||||||| ||||||||||||| ||| || ||||||||||||||||    
T  15952056 ttgggatgtcggtgttttctcttaatgtatgtcccttctccttgcct 15952010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 20589622 - 20589719
Alignment:
Q  148 aataatattttagagt-tggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcct 245  Q
    ||||||||||| |||| |||| |||||||||||||||| || ||||| |||||||||||| ||||| || | |  |||||||||| | ||| |||||||    
T  20589622 aataatatttt-gagtctggcggcataggatggaggttctccggggtgccaacctagttgagatgtcggaggtccctcttgatgcctgtcctttctcct 20589719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 12435958 - 12436007
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    ||||| |||||||||||||||||   ||||| ||||||||||||||||||    
T  12435958 ttggcggcataggatggaggtttgtcggggtgccaacctagttgggatgt 12436007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 13437897 - 13437988
Alignment:
Q  280 tttttataggtagtgcataagttttcatata--tgaaaaatggtgttattggtcttcaaattaaaaggaacgtaaccactatataaaagtat 369  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| |||| || ||||||||||||||||| || ||||| ||||||||    
T  13437897 tttttataggtagtgcataagttttcatatacatgaaaaatggtgttactggtattgaaattaaaaggaacgtatcctctatagaaaagtat 13437988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 40926535 - 40926465
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||| ||||||||||||||||| | ||||| |||||||||||||||||| | ||||| ||| ||||||||    
T  40926535 ttggcggcataggatggaggtttcccggggtgccaacctagttgggatgtcgatgtttcctcctgatgcat 40926465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 13619183 - 13619098
Alignment:
Q  148 aataatattttagagttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    |||||||||||  | || || |||||||||||||||| || | | | ||||||||||||||||||| |||||| ||||||||||||    
T  13619183 aataatatttttaatttagcggcataggatggaggttctccgagttgccaacctagttgggatgttagtgtttcctcttgatgcat 13619098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 28522856 - 28522923
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    ||||| |||||||||||||||| ||| |||| ||||||||||||||||||   ||||| |||||||||    
T  28522856 ttggcggcataggatggaggttctctagggtgccaacctagttgggatgtcaatgtttcctcttgatg 28522923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 17377596 - 17377510
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||| |||||||||||| ||| | | ||||  ||||||||||||    
T  17377596 aataatattttagagtttggcgtcataggatggaggtttcttggggtgccaacctagttgagatatcgttgttgcctcttgatgcat 17377510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 17151299 - 17151384
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctccttgc 248  Q
    ||||| ||||||||||||||||| | || || ||||||||||||| ||||  |||||| ||| |||||| ||||| | ||||||||    
T  17151299 ttggcggcataggatggaggtttcccggagtgccaacctagttggcatgtcagtgtttcctcctgatgcctatccttactccttgc 17151384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 24270907 - 24270842
Alignment:
Q  148 aataatattttagagttgg-cagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    ||||| ||||||||||| | ||||||||||||||||||| | |  || ||||||||||||||||||    
T  24270907 aataaaattttagagtttgacagcataggatggaggtttcccgcagtgccaacctagttgggatgt 24270842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 16290844 - 16290945
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||  |||||||||  | ||| ||||||||    
T  16290844 aataatattttagagtttggcagcataggatggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgtttgtcctttctcctt 16290943  T
Q  247 gc 248  Q
    ||    
T  16290944 gc 16290945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 16325708 - 16325633
Alignment:
Q  148 aataatattttagagttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctc 224  Q
    ||||| |||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||  ||||  ||||||||||    
T  16325708 aataaaattttagagt-ggcggcataggatggaggttttctgaggtgccaacctagttgaaatgtcagtgttttctc 16325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 26657677 - 26657756
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctccttgc 248  Q
    ||||||||||||||||| | |  || ||||| |||||||||||| ||||||| |||||||||||| |||  |||||||||    
T  26657677 gcataggatggaggtttcccgaagtgccaacttagttgggatgtcggtgtttcctcttgatgcatgtcctctctccttgc 26657756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 21499416 - 21499327
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgt--tttctcttgatgcatatcccttctccttgcct 250  Q
    ||||| || |||||| ||||||||||| ||| |||||||||||||||||| |||||  | ||||||||| | |||||  |||||||||||    
T  21499416 ttggcggcgtaggattgaggttttctgcggtgccaacctagttgggatgtcggtgttgtgtctcttgatacctatcctctctccttgcct 21499327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 29840849 - 29840935
Alignment:
Q  148 aataatattttagag-ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||| ||||||||| ||||| ||||| |||||||||||   ||||| |||||||||||||||||| | |||| | |||||||||||    
T  29840849 aataaaattttagagattggcggcatatgatggaggtttctcggggtgccaacctagttgggatgtcgatgttgtttcttgatgcat 29840935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 44351 - 44420
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgca 232  Q
    ||||| |||||| |||||||||| | |||||||||||||| ||||||| | ||||||| || ||||||||    
T  44351 ttggctgcatagtatggaggtttcccggggtaccaacctaattgggatttcggtgtttccttttgatgca 44420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 24184834 - 24184758
Alignment:
Q  155 ttttagag-ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    |||||||| ||||| |||||||||||||| || | ||| | |||||||||||||||||| ||||||  |||||||||    
T  24184834 ttttagagattggcggcataggatggagggttcccgggatgccaacctagttgggatgtcggtgttccctcttgatg 24184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 24317404 - 24317470
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    ||||| ||||||||| ||||||  | ||||| ||||||||||||| |||||||||||| |||||||||    
T  24317404 ttggcggcataggatagaggttccc-ggggtgccaacctagttggtatgttggtgtttcctcttgatg 24317470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 19742056 - 19742113
Alignment:
Q  173 aggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    |||||||||| || | ||||| |||||||||||||||||| |||||| |||| |||||    
T  19742056 aggatggaggcttcccggggtgccaacctagttgggatgtcggtgttgtctcctgatg 19742113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 26393416 - 26393352
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttg 227  Q
    ||||| |||||||||||||||||   |||||  |||| |||||||||||| | ||||||||||||    
T  26393416 ttggcggcataggatggaggtttcgcggggtggcaacttagttgggatgtcgttgttttctcttg 26393352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 1584 - 1482
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||||||||||||||| || |||||||||||||||||| | ||||| |||||||||||||||||| ||||||  |||||||||| | |||  |||||||    
T  1584 aataatattttagagtttggaagcataggatggaggtttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgcttgtcctctctcctt 1485  T
Q  247 gcc 249  Q
    |||    
T  1484 gcc 1482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 25760008 - 25760092
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    ||||||||||||||||| ||||||||||||||||||||||| |  || |||||||||||||||||| ||||||  ||||||||||    
T  25760008 aataatattttagagtttggcagcataggatggaggttttccgaagtgccaacctagttgggatgtcggtgttgcctcttgatgc 25760092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 26954041 - 26953938
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||||| | | |||||||||||||||||| ||||||| |||||||||||| ||   |||||||    
T  26954041 aataaaattttagagtttggcggcatatgatggaggttttctgagatgccaacctagttgggatgtcggtgtttcctcttgatgcatgtcgtctctcctt 26953942  T
Q  247 gcct 250  Q
    ||||    
T  26953941 gcct 26953938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 10623301 - 10623239
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||||||||||  | ||||| ||||||||||| |||||| ||||||| ||||||||||||    
T  10623301 ataggatggaggttccccggggtgccaacctagttaggatgtcggtgtttcctcttgatgcat 10623239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 1051391 - 1051324
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    ||||| || |||||||||||||| | | ||| |||||||||||||||||| ||||||  |||||||||    
T  1051391 ttggcggcttaggatggaggtttcccgaggtgccaacctagttgggatgtcggtgttccctcttgatg 1051324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 16309739 - 16309690
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    ||||| |||||||||||||||| || ||||| ||||| ||||||||||||    
T  16309739 ttggcggcataggatggaggttctccggggtgccaacttagttgggatgt 16309690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 18490733 - 18490684
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    ||||| |||||||||||||||| || ||||| ||||| ||||||||||||    
T  18490733 ttggcggcataggatggaggttctccggggtgccaacttagttgggatgt 18490684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 19826486 - 19826437
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    ||||| |||||||| ||||||||  |||||| ||||||||||||||||||    
T  19826486 ttggcggcataggacggaggtttcttggggtgccaacctagttgggatgt 19826437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 26430245 - 26430310
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    |||||| |||||||||| ||| ||||||||||||||| ||  ||||| ||||||||||| ||||||    
T  26430245 aataattttttagagtttggcggcataggatggaggtattacggggtgccaacctagttaggatgt 26430310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 2259471 - 2259401
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||| ||||||||||||||||| | ||| | |||||||||||||||||| ||||||| ||||||||||||    
T  2259471 ttggctgcataggatggaggtttcccgggatgccaacctagttgggatgtcggtgtttcctcttgatgcat 2259401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 21711621 - 21711544
Alignment:
Q  155 ttttagag-ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    |||||||| ||||| |||||||||||||| || | ||||| |||||||||||||||||| ||||||  ||||||||||    
T  21711621 ttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgc 21711544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 15614747 - 15614809
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    |||||||||||||| || | ||||| |||||||||||||||||| ||||||  ||||||||||    
T  15614747 gcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgc 15614809  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 24122975 - 24123029
Alignment:
Q  196 caacctagttgggatgttggtgttttctcttgatgcatatcccttctccttgcct 250  Q
    ||||||||||| ||||| ||||||| |||||||||  | ||||||||||||||||    
T  24122975 caacctagttgagatgtcggtgtttcctcttgatgtctgtcccttctccttgcct 24123029  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 44673758 - 44673664
Alignment:
Q  155 ttttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctccttgc 248  Q
    |||||||||| ||| ||||||||||||| ||||  ||||| |||||||||||||||||| | ||||  |||||||||  ||||| ||||||||||    
T  44673758 ttttagagtttggcggcataggatggagattttgcggggtgccaacctagttgggatgtcgatgttgcctcttgatgtctatccattctccttgc 44673664  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 11416065 - 11415962
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||| ||||||||||| |||||||||| |||| |||||||  |||| ||||| |||||||||||| ||||||| || ||||||  | |||  |||||||    
T  11416065 aataaaattttagagtttggcagcatagaatgggggttttccagggtgccaacttagttgggatgtcggtgtttccttttgatgtttgtcctctctcctt 11415966  T
Q  247 gcct 250  Q
    ||||    
T  11415965 gcct 11415962  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 34657979 - 34657917
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||| ||||||  | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  34657979 ataggatagaggttccccggggtgccaacctagttgggatgtcggtgtttcctcttgatgcat 34657917  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 8667187 - 8667087
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||||||||||||||| ||| |||||||||||||| ||||| |||  ||||||||||| |||||| | ||||  |||||||||| | |||  |||||||    
T  8667187 aataatattttagagtttggcggcataggatggagg-tttctcggggtccaacctagttaggatgtcgatgttgcctcttgatgcctgtccactctcctt 8667089  T
Q  247 gc 248  Q
    ||    
T  8667088 gc 8667087  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 33040664 - 33040582
Alignment:
Q  148 aataatattttagagttgg-cagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgat 229  Q
    ||||| ||||||||||| | | ||||| |||||||||||   ||||| |||||||||||||||||| | |||| |||||||||    
T  33040664 aataaaattttagagtttgacggcatatgatggaggtttctcggggtgccaacctagttgggatgtcgatgttgtctcttgat 33040582  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 37005967 - 37005905
Alignment:
Q  171 ataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||| |||||| || ||||| |||||||| ||||||||| |||| || ||||||||||||    
T  37005967 ataggatagaggttctccggggtgccaacctaattgggatgtcggtgcttcctcttgatgcat 37005905  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 19904680 - 19904619
Alignment:
Q  170 cataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    |||||||||||||| |  |||||| |||||||||||||||||| | || | |||||||||||    
T  19904680 cataggatggaggtctcttggggtgccaacctagttgggatgtcgatgatgtctcttgatgc 19904619  T

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Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 2289 - 2366
Alignment:
Q  155 ttttagag-ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    |||||||| ||||| |||||||||||||| || | ||||| |||||||||||||||||| ||||||  ||||||||||    
T  2289 ttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgc 2366  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 1538042 - 1537945
Alignment:
Q  154 attttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctccttgcct 250  Q
    ||||||||||| ||| ||||||||||||||||| |   |||  ||||||||||||||||| ||||||| |||||||||  | ||||| ||||||||||    
T  1538042 attttagagtttggcggcataggatggaggtttccctaggtggcaacctagttgggatgtcggtgtttcctcttgatgtctgtccctactccttgcct 1537945  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 1633292 - 1633395
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctcctt 246  Q
    ||||| ||||||||||| ||| ||||||||| |||||||   |||||  ||||||||||||  ||| ||||||| |||||||||||| |||  |||||||    
T  1633292 aataaaattttagagtttggcggcataggattgaggtttctcggggtgtcaacctagttggattgtcggtgtttcctcttgatgcatgtcctctctcctt 1633391  T
Q  247 gcct 250  Q
    ||||    
T  1633392 gcct 1633395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 1862401 - 1862352
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    ||||| |||||||||||||||| || ||||| ||||||||||||||||||    
T  1862401 ttggcggcataggatggaggttctccggggtgccaacctagttgggatgt 1862352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 4407477 - 4407428
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttggtgt 218  Q
    |||||||| ||||| |||||||||| |||||||||||||||||| |||||    
T  4407477 gcataggacggaggctttctggggtgccaacctagttgggatgtcggtgt 4407428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 4463498 - 4463455
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    |||||||||||||| || ||||||| ||||||||||||||||||    
T  4463498 gcataggatggaggcttcctggggtgccaacctagttgggatgt 4463455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 11842765 - 11842815
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttggtgtt 219  Q
    ||||||| |||||| || | |||||||||||||||||||||||| ||||||    
T  11842765 gcatagggtggaggcttcccggggtaccaacctagttgggatgtcggtgtt 11842815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 980923 - 980972
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgt 212  Q
    ||||| |||||||||||||||| || || || ||||||||||||||||||    
T  980923 ttggcggcataggatggaggttctccggagtgccaacctagttgggatgt 980972  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 12163398 - 12163467
Alignment:
Q  162 gttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgc 231  Q
    |||||| ||| | ||||||||||| | | ||| |||||||||||||||||| ||||||  ||||||||||    
T  12163398 gttggcggcagacgatggaggtttcccgaggtgccaacctagttgggatgtcggtgttgcctcttgatgc 12163467  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 28937358 - 28937407
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttggtgt 218  Q
    |||||||||||||| |||| ||| | |||||||||||||||||| |||||    
T  28937358 gcataggatggaggctttccgggatgccaacctagttgggatgtcggtgt 28937407  T

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Target: scaffold0437 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 11409 - 11485
Alignment:
Q  155 ttttagag-ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    |||||||| ||||| |||||||||||||| || | ||||| |||||||||||||||||| ||||||  |||||||||    
T  11409 ttttagagattggcggcataggatggagggttcccggggtgccaacctagttgggatgtcggtgttccctcttgatg 11485  T

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Target: scaffold0291 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15786 - 15742
Alignment:
Q  1 tatggatttcttttgtgacaaaattggtttgcctaactacaggtt 45  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||    
T  15786 tatggatttctttcgtgacatagttggtttgcctaactacaggtt 15742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 15640 - 15557
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    ||||| ||||||||||| ||| |||||||| |||| ||| || |||| ||||||| ||||| |||| ||||||||||| |||||    
T  15640 aataaaattttagagtttggcggcataggacggagatttcctagggtgccaacctggttggaatgtcggtgttttctcctgatg 15557  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 99464 - 99508
Alignment:
Q  1 tatggatttcttttgtgacaaaattggtttgcctaactacaggtt 45  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||    
T  99464 tatggatttctttcgtgacagagttggtttgcctaactacaggtt 99508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 2309 - 2226
Alignment:
Q  148 aataatattttagagtt-ggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    ||||| ||||||||||| ||| ||||||||||||||||| | ||||| |||| |||||||| | || ||||||| || ||||||    
T  2309 aataaaattttagagtttggcggcataggatggaggtttcccggggtgccaatctagttggaacgtcggtgtttccttttgatg 2226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 2786 - 2853
Alignment:
Q  163 ttggcagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatg 230  Q
    ||||| |||||||||||||||||   | |||||||||||||||||||||| | ||||  |||||||||    
T  2786 ttggcggcataggatggaggtttctcgaggtaccaacctagttgggatgtcgatgttgcctcttgatg 2853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 26441 - 26542
Alignment:
Q  149 ataatattttagagttgg-cagcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcatatcccttctccttg 247  Q
    |||||||||||||||| | | | ||||||||||||||| | ||| | |||||||| | ||||||||||||||| |||| ||||||| |||  |||| |||    
T  26441 ataatattttagagtttgacggtataggatggaggtttcccgggatgccaacctaat-gggatgttggtgtttcctctcgatgcatgtcctctctctttg 26539  T
Q  248 cct 250  Q
    |||    
T  26540 cct 26542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 26376 - 26423
Alignment:
Q  86 ttattttcttctg--ggttttgatctagtcccccctcttcttgtatat 131  Q
    |||||||||||||  |||||||  ||||||||||||||||||||||||    
T  26376 ttattttcttctgagggttttggcctagtcccccctcttcttgtatat 26423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 16233 - 16282
Alignment:
Q  196 caacctagttgggatgttggtgttttctcttgatgcatatcccttctcct 245  Q
    ||||||||||||||||| |||| ||||||||||| ||| ||| |||||||    
T  16233 caacctagttgggatgtcggtgctttctcttgatacatgtcctttctcct 16282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 80345 - 80409
Alignment:
Q  169 gcataggatggaggttttctggggtaccaacctagttgggatgttggtgttttctcttgatgcat 233  Q
    ||||||||||||| |||   ||||| |||||||||||||||||||| |||||  | |||||||||    
T  80345 gcataggatggagatttcgcggggtgccaacctagttgggatgttgctgtttcatgttgatgcat 80409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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