View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8181_low_1 (Length: 1235)
Name: NF8181_low_1
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_1 |
 | |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 1195; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1195; E-Value: 0
Query Start/End: Original strand, 20 - 1235
Target Start/End: Original strand, 36489528 - 36490743
Alignment:
| Q |
20 |
ctatataccatggtgatgcgaacctcagaatcaagtaaagaaacaataatgaaaagaagagataacaatggataaatagtagtattttattgataataga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36489528 |
ctatataccatggtgatgcgaacctcagaatcaagtaaagaaacaataatgaaaagaagagataacaatggataaatagtagtattttattgataataga |
36489627 |
T |
|
| Q |
120 |
atagtaatagtagttcaaggtttctctaactactaccagagcgaagcaccgatgacaccgagagaaatcctactctcgcactaacagaaagttattccat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36489628 |
atagtaatagtagttcaaggtttctctaactactaccagagcgaagcaccgatgacaccgagagaaatcctactctcgcactaacagaaagttattccat |
36489727 |
T |
|
| Q |
220 |
cctagcctctcaaaccctataaggctataacatattcttatatactactaaggagatattattagataatatctttactaagaagatattatttagagaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36489728 |
cctagcctctcaaaccctataaggctataacatattcttatatactactaaggagatattattagataatatctttactaagaagatattatttagagaa |
36489827 |
T |
|
| Q |
320 |
tatctttgttatatattacaaataaaatattgctattactaaggagatattattgaagaatatctttactaaaacgatattattcagagaatctttgttg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36489828 |
tatctttgttatatattacaaataaaatattgctattactaaggagatattattgaagaatatctttactaaaacgatattattcagagaatctttgttg |
36489927 |
T |
|
| Q |
420 |
gatattactaatataatattcctattacttagacaccctactaattacttaaacaccttcacagattgggtcctaaaacatggcttgttgcatcgagagt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36489928 |
gatattactaatataatattcctattacttagacaccctactaattacttaaacaccttcacagattgggtcctaaaacatggcttgttgcatcgagagt |
36490027 |
T |
|
| Q |
520 |
tatcttcattcccaaatctttagtgatagttacattttggatgatagtgacaaataaaagtacgatgactttaatagttacatttgtggtaaagtcagaa |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36490028 |
tatcttcattcccaaatctttagtgatagttacattttggatgatagtgacaaataaaagtacgatgactttaatagttacatttgtggtaaagtcagaa |
36490127 |
T |
|
| Q |
620 |
gcagtagtaagagcaagagttctgatataataactaggtcacaaatagtgaagctagagttctagtataataactagcacatatgatacaagtgatagtg |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490128 |
gcagtagtaagagcaagagttctgatataataactaggtcacaaatagtgaagctagagttctagtataataactagcacatatgatacaagtgatagtg |
36490227 |
T |
|
| Q |
720 |
attttactaaaagataatgtttgaactatctcaatgagactnnnnnnngtatttgaggattgaattgacaattgttatgtaataaactatcagaaaattt |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490228 |
attttactaaaagataatgtttgaactatctcaatgagactaaaaaaagtatttgaggattgaattgacaattgttatgtaataaactatcagaaaattt |
36490327 |
T |
|
| Q |
820 |
tgaatttaaatgaatatttgcgaacaccatagatatcatttgaaaatgagcagttcatatagagccaaattttccatttcatgactgcccaggccttata |
919 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490328 |
tgaatttaaatgaatatttgcgaacaccatagatatcatttgaaaatgagcagttcatatagagccaaattttccatttcatgactgcccaggccttata |
36490427 |
T |
|
| Q |
920 |
agcactacttaagtcttatttttaggcgatgtggtactaaacattcccatgacacccaacacagggaagaagctagaggctgcaatgacggaatcttgaa |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490428 |
agcactacttaagtcttatttttaggcgatgtggtactaaacattcccatgacacccaacacagggaagaagctagaggctgcaatgacggaatcttgaa |
36490527 |
T |
|
| Q |
1020 |
gttgccgcaattaaggcggctagggttggaccgcatttaaagcggctttccgccaaccctaattacttcatttacaggatactcatactatacaatcata |
1119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36490528 |
gttgccgcaattaaggcggctagggttggaccgcatttaaagcggctttccgccaaccctaattacttcatttacaggatactcatactatacaatcata |
36490627 |
T |
|
| Q |
1120 |
attggcctttccgtcaaccctaatcacttcatttacaggatactgtacaaccataactggcctttctatcaactatgctgtttatttggcgtgatgattc |
1219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36490628 |
attggcctttccgtcaaccctaatcacttcatttacaggatactgtacaaccataactggcctttctatcaactatgctgtttatttggcgtgatgattc |
36490727 |
T |
|
| Q |
1220 |
atcaatgtgttgatgt |
1235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36490728 |
atcaatgtgttgatgt |
36490743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 261 - 354
Target Start/End: Original strand, 48261312 - 48261404
Alignment:
| Q |
261 |
atactactaaggagatattattagataatatctttactaagaagatattatttagagaatatctttgttatatattacaaataaaatattgcta |
354 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||||||||||||| | || | ||||||||| | || || ||||| ||||||||||||||| |
|
|
| T |
48261312 |
atactactaaggagatattttcggagaatatctttactaagaagata-tcttcatagaatatctctattgtaaattactaataaaatattgcta |
48261404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 433 - 479
Target Start/End: Original strand, 48261465 - 48261511
Alignment:
| Q |
433 |
taatattcctattacttagacaccctactaattacttaaacaccttc |
479 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48261465 |
taataatcttattacttagacaccctactaattacttaaataccttc |
48261511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 29408952 - 29408988
Alignment:
| Q |
435 |
atattcctattacttagacaccctactaattacttaa |
471 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29408952 |
atatttctattacttagacaccctactaattacttaa |
29408988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 827 - 876
Target Start/End: Original strand, 36319048 - 36319097
Alignment:
| Q |
827 |
aaatgaatatttgcgaacaccatagatatcatttgaaaatgagcagttca |
876 |
Q |
| |
|
||||||||||||| ||| || || ||| |||||||||||||||||||||| |
|
|
| T |
36319048 |
aaatgaatatttgtgaatactatggatgtcatttgaaaatgagcagttca |
36319097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 9e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 43791889 - 43791702
Alignment:
| Q |
51 |
caagtaaagaaacaataatgaaaagaagagataacaatggataaatagtagtatttt---attgataatagaatagtaatagtagttcaaggtttctcta |
147 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||| ||||| ||||||||||| ||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
43791889 |
caagtaaagaaacaatagtgaaaaga---gataaaaatgaataaagagtagtatttttttattgataatagaacgataatagtagtagagggtttctcta |
43791793 |
T |
|
| Q |
148 |
actactaccagagcgaagcaccgatgacaccgagagaaatcctactctcgcactaacagaaagttattccatcctagcctctcaaacccta |
238 |
Q |
| |
|
|||||| ||||||| |||| ||| || ||||| |||||||||| || ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
43791792 |
actactcccagagcaaagctccggaacaacagagaggtatcctactctggccctaacagaaagttattccatcatagcctctaaaacccta |
43791702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 187 - 311
Target Start/End: Original strand, 5486452 - 5486569
Alignment:
| Q |
187 |
tcctactctcgcactaacagaaagttattccatcctagcctctcaaaccctataaggctataacatattcttatatactactaaggagatattatt-aga |
285 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||| || |
|
|
| T |
5486452 |
tcctactctggccctaacagaaagttattccatcatagcctctcaaaccctagaa--------cttattcttatatactactaaggagatattattcgga |
5486543 |
T |
|
| Q |
286 |
taatatctttactaagaagatattat |
311 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
5486544 |
gaatatctatactaagaagatattat |
5486569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 5486582 - 5486638
Alignment:
| Q |
294 |
ttactaagaagatattatttagagaatatctttgttatatattacaaataaaatatt |
350 |
Q |
| |
|
||||| || |||||||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5486582 |
ttacttaggagatattattcagagaatatctttattatatattactaataaaatatt |
5486638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 42644329 - 42644421
Alignment:
| Q |
33 |
tgatgcgaacctcagaatcaagtaaagaaacaataatgaaaagaagagataacaatgg----ataaatagtagtattttattgataatagaat |
121 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
42644329 |
tgatgcgaaccccaaaatcaagtaaggaaacaataatgaaaataagagataacaatggataaataaatagtagtgttttattgaaaatagaat |
42644421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 5321516 - 5321561
Alignment:
| Q |
432 |
ataatattcctattacttagacaccctactaattacttaaacacct |
477 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
5321516 |
ataatattcctactgcttagacaccctactaattacttaaacacct |
5321561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 24213631 - 24213586
Alignment:
| Q |
433 |
taatattcctattacttagacaccctactaattacttaaacacctt |
478 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
24213631 |
taataatcttattacttagacaccatactaattacttaaatacctt |
24213586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 827 - 876
Target Start/End: Original strand, 2175657 - 2175706
Alignment:
| Q |
827 |
aaatgaatatttgcgaacaccatagatatcatttgaaaatgagcagttca |
876 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||||||||||| ||||| |
|
|
| T |
2175657 |
aaatgaatatttgtgatcaccgtagatatcatttgaaaatgagcggttca |
2175706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 7032387 - 7032342
Alignment:
| Q |
434 |
aatattcctattacttagacaccctactaattacttaaacaccttc |
479 |
Q |
| |
|
||||||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7032387 |
aatattcataatacttagacaccctactaattgcttaaacaccttc |
7032342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 442 - 495
Target Start/End: Original strand, 7032392 - 7032445
Alignment:
| Q |
442 |
tattacttagacaccctactaattacttaaacaccttcacagattgggtcctaa |
495 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
7032392 |
tattactcagacaccctactaattacttaaagaccttctaacattgggtcctaa |
7032445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 433 - 479
Target Start/End: Complemental strand, 22006 - 21960
Alignment:
| Q |
433 |
taatattcctattacttagacaccctactaattacttaaacaccttc |
479 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
22006 |
taataatcttattagttagacaccctactaattacttaaataccttc |
21960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 433 - 478
Target Start/End: Complemental strand, 24157254 - 24157209
Alignment:
| Q |
433 |
taatattcctattacttagacaccctactaattacttaaacacctt |
478 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
24157254 |
taatattcttattacttagacaccctactggttactgaaacacctt |
24157209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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