View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8181_low_14 (Length: 238)
Name: NF8181_low_14
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_14 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0941 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 140453 - 140600
Alignment:
| Q |
11 |
atcaggtttgttattttgtattaggtttttgagtgccaatcttgtaggttgattggctaagcctcttaggttccaataaaggatcttcatctaaaaggtt |
110 |
Q |
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| T |
140453 |
atcaggttcgttattttgtattaggtttttgagtgccaatcttgtaggttgattggctaagcctcttaggttccaataaaggatcttcatctaaaaggtt |
140552 |
T |
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| Q |
111 |
tggggtgtgcagcctttgatctggtagagtaaaggttagaaggcgtag |
158 |
Q |
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| T |
140553 |
tggggtgtgcagcctttgatctggtagagtaaaggttagaaggcgtag |
140600 |
T |
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Target: scaffold0019; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 140638 - 140680
Alignment:
| Q |
196 |
ctgatgtgttacaatcttgaagggcgggttgtccaaggtctgt |
238 |
Q |
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| T |
140638 |
ctgatgtgttacaatcttgaagggagggttgtccaaggtctgt |
140680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0941 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 1584 - 1536
Alignment:
| Q |
66 |
gctaagcctcttaggttccaataaaggatcttcatctaaaaggtttggg |
114 |
Q |
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| T |
1584 |
gctaaacctcttaagttccaataaaggcacttcatctaaaaggcttggg |
1536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 21004338 - 21004302
Alignment:
| Q |
18 |
ttgttattttgtattaggtttttgagtgccaatcttg |
54 |
Q |
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| T |
21004338 |
ttgttatttagaattaggtttttgagtgccaatcttg |
21004302 |
T |
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