View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8181_low_2 (Length: 892)
Name: NF8181_low_2
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 847; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 11 - 873
Target Start/End: Original strand, 42452833 - 42453695
Alignment:
| Q |
11 |
gagatgaaacctcaaggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452833 |
gagatgaaacctcaaggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagt |
42452932 |
T |
|
| Q |
111 |
ggaatgagcaatactcttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctgg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42452933 |
ggaatgagcaatactcttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctgg |
42453032 |
T |
|
| Q |
211 |
agcaaacgatacaaggatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaacct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453033 |
agcaaacgatacaaggatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaacct |
42453132 |
T |
|
| Q |
311 |
tctgggctgaagaagatgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtacaaaaagtacacagtgccaatgctttttc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
42453133 |
tctgggctgaagaagatgggggaaattcaattgtctttcaagtttactagcccttctaaagctaatttgtataaaaagtacacaatgccaatgctttttc |
42453232 |
T |
|
| Q |
411 |
cacaacatttcgaggatccgctgtctcaagctcagttatacggattaaggcaacaaactatcgagcttgtgcggtcaaatatgagcaaagctgaaccgcc |
510 |
Q |
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| T |
42453233 |
cacaacatttcgaggatccgctgtctcaagctcagttatacggattaaggcaacaaactatcgagcttgtgcggtcaaatatgagcaaagctgaaccgcc |
42453332 |
T |
|
| Q |
511 |
gttgagaaatgaggttgttgattatatgctagattcacgtgaaatcgtgtggagtatgagaagatgtaaagctgattttgagaggatcaacgtctttcta |
610 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42453333 |
gttgagaaatgaggttgttgattatatgctagattcacgtgaaatcgtgtggagtatgagaagatgtaaagctgattttgagaggattaacgtctttcta |
42453432 |
T |
|
| Q |
611 |
aattgcttggttggtatttacacttattttgatgacgtacgcaagtggaaagatcttgtttcaccaattatagctcacttgttgctcgtcgtcttgttct |
710 |
Q |
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| T |
42453433 |
aattgcttggttggtatttacacttattttgatgacgtacgcaagtggaaagatcttgtttcaccaattatagctcacttgttgctcgtcgtcttgttct |
42453532 |
T |
|
| Q |
711 |
ttctgcctcaatcgttgttgccagcaatatttcttgctcttatagtccatatgctgctggaatttcaaataaagccaaaaacattatcccatgcagattt |
810 |
Q |
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| T |
42453533 |
ttctgcctcaatcgttgttgccagcaatatttcttgctcttatagtccatatgctgcaggaatttcaaataaagccaaaaacattatcccatgcagattt |
42453632 |
T |
|
| Q |
811 |
gcatttgtctcatgtgcatacagcaagtgaagatgaattgcaagaagagtttgatccaatgcc |
873 |
Q |
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| T |
42453633 |
gcatttgtctcatgtgcatacagcaagtgaagatgaattgcaagaagagtttgatccaatgcc |
42453695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 27253755 - 27253643
Alignment:
| Q |
32 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
131 |
Q |
| |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| |||||||||| |||| ||||||||||||||| ||||| |
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| T |
27253755 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttggg |
27253656 |
T |
|
| Q |
132 |
aggtctatgatcc |
144 |
Q |
| |
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| || |||||||| |
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| T |
27253655 |
aagtttatgatcc |
27253643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 21197913 - 21197801
Alignment:
| Q |
32 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
131 |
Q |
| |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| ||| |||||| |||| ||||||||||||||| ||||| |
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| T |
21197913 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatattctttcaccaaggtggaatgagcaatatacttggg |
21197814 |
T |
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| Q |
132 |
aggtctatgatcc |
144 |
Q |
| |
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| || |||||||| |
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| T |
21197813 |
aagtttatgatcc |
21197801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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