View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8181_low_3 (Length: 886)

Name: NF8181_low_3
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8181_low_3
NF8181_low_3
[»] chr6 (2 HSPs)
chr6 (357-871)||(2150341-2150863)
chr6 (17-288)||(2150893-2151164)


Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 357 - 871
Target Start/End: Complemental strand, 2150863 - 2150341
Alignment:
Q  357 tgagaaggaggaattcacatactgttgagattggaccattgtgctagaagagtagacaaaaaagtgagtgaaaaatatacaaggttgtgaat--tgtgat 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  2150863 tgagaaggaggaattcacatactgttgagattggaccattgtgctagaagagtagacaaaaaagtgagtgaaaaatatacaaggttgtgaattgtgtgat 2150764  T
Q  455 gaagtgtgtgttgaatgttaat-tatatata------gagtgaaaaatctcttaggaagttacaaaggaagctcaatggaaatgtgtaggaaatggtcgt 547  Q
    ||||||||||||||||||| || ||||||||      ||||||||||||||||||||||  || || ||||||||||||||||||||||||||||||| |    
T  2150763 gaagtgtgtgttgaatgttgatatatatatatatagtgagtgaaaaatctcttaggaagaaac-aacgaagctcaatggaaatgtgtaggaaatggtcat 2150665  T
Q  548 aaaagcatataacaataacaaagaaattacgaaggaatatgttgggcacgtcaacctttcttgtaacataaataaactgagtgaaggaaaatgccccaaa 647  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2150664 aaaagcatataacaataacaaagaaattacgaaggaatatgtagggcacatcaacctttcttgtaacataaataaactgagtgaaggaaaatgccccaaa 2150565  T
Q  648 ggtcaatgacaacgactttgttgtcctatagttattttgtgtgtcaagttggttaaatatttaagagataaaatatttacaccattattttctgacaatt 747  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2150564 ggtcaatgacaacgactttgttgtcctatagttattttgtgtgtcaagttggttaaatatttaagagataaaatatttacaccattattttatgacaatt 2150465  T
Q  748 ttatctatcataatcatattatctttatcgttttgattttcgtgtcaatgtcgttannnnnnnnnnnnnngtaaaactatggttgacacgtaagttgtca 847  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||    
T  2150464 ttatctatcataatcatattatctttatcgttttgattttcgtgtcaatgtcgttattttttatttttttgtaaaactatggttgacacgtaagttgtca 2150365  T
Q  848 acaacctcatatccacattgatgt 871  Q
    ||||||||||||||||||||||||    
T  2150364 acaacctcatatccacattgatgt 2150341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 2151164 - 2150893
Alignment:
Q  17 catttttgttaccttaaacatatcatacttacacaataccaacactaataataattttagaacatcaattaattgaaggtaaacatgttgttggtgtcag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2151164 catttttgttaccttaaacatatcatacttacacaataccaacactaataataattttagaacatcaattaattgaaggtaaacatgttgtcggtgtcag 2151065  T
Q  117 acaacatatgtggaacacatcgcacattcaatcttattagtcctagcgagtatatctcagttgataaggacattacattatagtatctagggatccattt 216  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2151064 acaacatatgtggaacacatcgcacattcaatcttattagtcttcgcgagtatatctcagttgataaggacattacattatagtatctagggatccattt 2150965  T
Q  217 attcgatgaatttctagctactagaatgaaatttgctatatttgcataaacaaaatatattaaataaattct 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2150964 attcgatgaatttctagctactagaatgaaatttgctatatttgcataaacaaaatatattaaataaattct 2150893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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