View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8181_low_5 (Length: 621)
Name: NF8181_low_5
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 36 - 489
Target Start/End: Complemental strand, 13657932 - 13657457
Alignment:
| Q |
36 |
tttcatcgaagatattgaattgataaacatgtatttctttgtagtattaaagttctttgtcaccatgatgaatatcatgatagaatcaaagaagacgact |
135 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13657932 |
tttcatcgaagacattgaattggtaaacatgtatttctttgtattattaaagttcttggtcaccatgatgaatatcatgatagaatcaaagaagacgatc |
13657833 |
T |
|
| Q |
136 |
ggggagatcttgaggggtccttggtagaagggagggtcttacatagaggcgggaaccgttgtgacactcccgttgaaaacaaagccacccttacaaggct |
235 |
Q |
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| T |
13657832 |
ggggagatcttgaggggtccttggtagctaggagggtcttacatagaggcggaaaccgttgtgacactcccgttgaaaacaaagctacccttacaaggct |
13657733 |
T |
|
| Q |
236 |
ctttcattcatgaggtaggacgtgacttctctactcggatccgtgtgtcggagttggttgatgataagttgcattatattagtgatgatagtcattaca- |
334 |
Q |
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| T |
13657732 |
ctttcattcatgaggtaggacgtgacttctctactcggatccatgtgtcggagttagttgatgataagttgcattatattagtgatgatagtcattacat |
13657633 |
T |
|
| Q |
335 |
--------------------ttgttgataatatg-ataattgcatgaacacctatcatacatgtcttgtttgaatatgtttggattgtgaattctcatcg |
413 |
Q |
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| T |
13657632 |
aattatgtgcatattataagttgttgataatatgtataattgcatgaacacctatcatacatgtcttgtttgaatatgcttggattgtgaattctcatcg |
13657533 |
T |
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| Q |
414 |
tacaaacaaccacaagaaatctacggtaaatagagctaaaccgaagtgataccttttgtataaagagattatgtgt |
489 |
Q |
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| T |
13657532 |
tacaaacaaccacaagaaatctacggtaaatagagctaaaccgaagtgataccttttgtataaagagactatgtgt |
13657457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 36 - 489
Target Start/End: Complemental strand, 13716574 - 13716099
Alignment:
| Q |
36 |
tttcatcgaagatattgaattgataaacatgtatttctttgtagtattaaagttctttgtcaccatgatgaatatcatgatagaatcaaagaagacgact |
135 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13716574 |
tttcatcgaagacattgaattggtaaacatgtatttctttgtattattaaagttcttggtcaccatgatgaatatcatgatagaatcaaagaagacgatc |
13716475 |
T |
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| Q |
136 |
ggggagatcttgaggggtccttggtagaagggagggtcttacatagaggcgggaaccgttgtgacactcccgttgaaaacaaagccacccttacaaggct |
235 |
Q |
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| T |
13716474 |
ggggagatcttgaggggtccttggtagctaggagggtcttacatagaggcggaaaccgttgtgacactcccgttgaaaacaaagctacccttacaaggct |
13716375 |
T |
|
| Q |
236 |
ctttcattcatgaggtaggacgtgacttctctactcggatccgtgtgtcggagttggttgatgataagttgcattatattagtgatgatagtcattaca- |
334 |
Q |
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| T |
13716374 |
ctttcattcatgaggtaggacgtgacttctctactcggatccatgtgtcggagttagttgatgataagttgcattatattagtgatgatagtcattacat |
13716275 |
T |
|
| Q |
335 |
--------------------ttgttgataatatg-ataattgcatgaacacctatcatacatgtcttgtttgaatatgtttggattgtgaattctcatcg |
413 |
Q |
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| T |
13716274 |
aattatgtgcatattataagttgttgataatatgtataattgcatgaacacctatcatacatgtcttgtttgaatatgcttggattgtgaattctcatcg |
13716175 |
T |
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| Q |
414 |
tacaaacaaccacaagaaatctacggtaaatagagctaaaccgaagtgataccttttgtataaagagattatgtgt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13716174 |
tacaaacaaccacaagaaatctacggtaaatagagctaaaccgaagtgataccttttgtataaagagactatgtgt |
13716099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 575 - 617
Target Start/End: Complemental strand, 13657375 - 13657333
Alignment:
| Q |
575 |
acaatgccacaatgctcgtaagaagaacatgaacttagaagaa |
617 |
Q |
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| T |
13657375 |
acaatgccacaatgctcgcaagaagaacatgaagttagaagaa |
13657333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 575 - 617
Target Start/End: Complemental strand, 13716017 - 13715975
Alignment:
| Q |
575 |
acaatgccacaatgctcgtaagaagaacatgaacttagaagaa |
617 |
Q |
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| T |
13716017 |
acaatgccacaatgctcgcaagaagaacatgaagttagaagaa |
13715975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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