View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8181_low_6 (Length: 515)
Name: NF8181_low_6
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 2150838 - 2150341
Alignment:
| Q |
11 |
tgagattggaccattgtgctagaagagtagacaaaaaagtgagtgaaaaatatacaaggttgtgaat--tgtgatgaagtgtgtgttgaatgttaat-ta |
107 |
Q |
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| T |
2150838 |
tgagattggaccattgtgctagaagagtagacaaaaaagtgagtgaaaaatatacaaggttgtgaattgtgtgatgaagtgtgtgttgaatgttgatata |
2150739 |
T |
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| Q |
108 |
tatata------gagtgaaaaatctcttaggaagttacaaaggaagctcaatggaaatgtgtaggaaatggtcgtaaaagcatataacaataacaaagaa |
201 |
Q |
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| T |
2150738 |
tatatatatagtgagtgaaaaatctcttaggaagaaac-aacgaagctcaatggaaatgtgtaggaaatggtcataaaagcatataacaataacaaagaa |
2150640 |
T |
|
| Q |
202 |
attacgaaggaatatgttgggcacgtcaacctttcttgtaacataaataaactgagtgaaggaaaatgccccaaaggtcaatgacaacgactttgttgtc |
301 |
Q |
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| T |
2150639 |
attacgaaggaatatgtagggcacatcaacctttcttgtaacataaataaactgagtgaaggaaaatgccccaaaggtcaatgacaacgactttgttgtc |
2150540 |
T |
|
| Q |
302 |
ctatagttattttgtgtgtcaagttggttaaatatttaagagataaaatatttacaccattattttctgacaattttatctatcataatcatattatctt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2150539 |
ctatagttattttgtgtgtcaagttggttaaatatttaagagataaaatatttacaccattattttatgacaattttatctatcataatcatattatctt |
2150440 |
T |
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| Q |
402 |
tatcgttttgattttcgtgtcaatgtcgttannnnnnnnnnnnnngtaaaactatggttgacacgtaagttgtcaacaacctcatatccacattgatgt |
500 |
Q |
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| T |
2150439 |
tatcgttttgattttcgtgtcaatgtcgttattttttatttttttgtaaaactatggttgacacgtaagttgtcaacaacctcatatccacattgatgt |
2150341 |
T |
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