View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8181_low_7 (Length: 428)
Name: NF8181_low_7
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 28932271 - 28932671
Alignment:
| Q |
12 |
cacacacgaggaagatgacaagagatatgtgatttacagatagtgcctcaggaggaacttacggatacgtgaatacagtcttcaatcagaaactcaaaag |
111 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932271 |
cacacatgaggaagatgacaagagatatgtgatttacagatagtgcctcgggaggaacttacggatacgtgaatacagtcttcaatcagaaactcaaaag |
28932370 |
T |
|
| Q |
112 |
caagaggatggtcaaggtcaaccccttgagaaacatcaataatatgtaagtgaccctgataaatgaagaataaataagtaaactatgtatagagagacat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932371 |
caagaggatggtcaaggtcaaccccttgagaaacatcaataatatataagtgaccctgataaatgaagaataaataagtaaactatgtatagagagacat |
28932470 |
T |
|
| Q |
212 |
ttcgtcactaaaatataaacacccaaagaagtattcacctcattataaagtatattatattcactgaggtcgccatgcaccaatctgcacttctgatata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932471 |
ttcgtcactaaaatataaacacccaaagaagtattcacctcattataaagtatattatattcactgaggtcgccatgcaccaatctgcacttctgatata |
28932570 |
T |
|
| Q |
312 |
atgtccgcattgcaacaatcatctgaaacacaaaagctcatagtgtcagcctcaaaaattggcataacagattaaactttagcacctttataacttagaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28932571 |
atgtccgcattgcaacaatcatctgaaacacaaaagctcatagtgtcagcctcaaaaattggcataacagattaaactttagcacctttataatttagaa |
28932670 |
T |
|
| Q |
412 |
a |
412 |
Q |
| |
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| |
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| T |
28932671 |
a |
28932671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 388
Target Start/End: Complemental strand, 35717173 - 35716800
Alignment:
| Q |
13 |
acacacgaggaagatgacaagagatatgtgatttacagatagtgcctcaggaggaacttacggatacgtgaatacagtcttcaatcagaaactcaaaagc |
112 |
Q |
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||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| | ||||||||||| ||||||||||||||| |||||| |||| ||| |
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| T |
35717173 |
acacatgaggaagaggacaagagatatgtaatttacagctagtgcct-aggagta-cttacggatacatgaatacagtcttcacgcagaaaatcaagagc |
35717076 |
T |
|
| Q |
113 |
aagaggatggtcaaggtcaaccccttgagaaacatcaataatatgtaagtgaccctgataaatgaagaataaataagtaaactatgtatagagagacatt |
212 |
Q |
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| ||||||||||| | |||||| ||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||| || |||||||||||| | |
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| T |
35717075 |
atgaggatggtcaggatcaaccgcttgagaaacatcaataatatacaagtgaccctgagaaataaagaacaaataagtaaacaatttatagagagacact |
35716976 |
T |
|
| Q |
213 |
tcgtcactaaaatataaacacccaaagaagtattcacctcattataaagtatattatattcactgaggtcgccatgcaccaatctgcacttctgatataa |
312 |
Q |
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||| ||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
35716975 |
ctgtctttaaaatataaacatccaaaggagtattcacctcataatagagtatattatattcactgaggtcaccatgcaccaatttgcacttctgatataa |
35716876 |
T |
|
| Q |
313 |
tgtccgcattgcaacaatcatctgaaacacaaaagctcatagtgtcagcctcaaaaattggcataacagattaaac |
388 |
Q |
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|||||||||||||||||| |||| ||| ||||| ||||||| |||||||| ||||||| |||||||||| ||||| |
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| T |
35716875 |
tgtccgcattgcaacaattatctaaaatacaaatgctcataaagtcagcctaaaaaattagcataacagaataaac |
35716800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 116 - 335
Target Start/End: Original strand, 3592593 - 3592810
Alignment:
| Q |
116 |
aggatggtcaaggtcaaccccttgagaaacatcaataatatgtaagtgaccctgataaatgaagaataaataagtaaactatgtatagagagacatttcg |
215 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||| | ||||||| |||| |||| || || ||||| ||||| | |
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| T |
3592593 |
aggatggtcaatgtcaaccgcttgagaaacatcaataatatacaagtgaccctggtaagtaaagaatatgtaagcaaacaatttacagaga--catttag |
3592690 |
T |
|
| Q |
216 |
tcactaaaatata-aacacccaaagaagtattcacctcattataaagtatattatattcactgaggtcgccatgcaccaatctgcacttctgatataatg |
314 |
Q |
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||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3592691 |
tcactaaaa-atataacacccaaaggagtattcacctcataataaagtatattatattcactgaggtcaccatgcaccaatctgcacttctgatataaat |
3592789 |
T |
|
| Q |
315 |
tccgcattgcaacaatcatct |
335 |
Q |
| |
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||||||||||||||| |||| |
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| T |
3592790 |
cccgcattgcaacaattatct |
3592810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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