View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8181_low_8 (Length: 418)
Name: NF8181_low_8
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 22 - 395
Target Start/End: Complemental strand, 5218841 - 5218468
Alignment:
| Q |
22 |
aagccgtcgttcggtgtgtgtgcgcccggcagcaaagtttctcaacctcacattgttcctctctcccttctcaccatgggccaccacaacactctccagc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5218841 |
aagccgtcgttcggtgtgtgtgcgcccggcagcaaagtttctcaacctcacattgttcctctctcccttctcacaatgggccaccacaacactctccagc |
5218742 |
T |
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| Q |
122 |
tgttcctttacctgggccaatcgtcttgggtctctaatgggtccaggtttggatgcctcttctacgtaaagaatgcaggccacccttccattgtgggtcc |
221 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218741 |
tgttcctttacctgggccaatcgtcttggatctctaatgggtccaggtttggatgcctcttctacgtaaagaatgcaggccacccttccattgtgggtcc |
5218642 |
T |
|
| Q |
222 |
acgccgttgctgaggtgacattgcagctcatgttcaccaacaccgctgatatttctgatagtaggcctggtctatccatcccactcatctccaatgctgt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218641 |
acgccgttgctgaggtgacattgcagctcatgttcaccaacactgctgatatttctgatagtaggcctggtctatccatcccactcatctccaatgctgt |
5218542 |
T |
|
| Q |
322 |
gttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatcat |
395 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5218541 |
gttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatcat |
5218468 |
T |
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