View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8181_low_9 (Length: 401)
Name: NF8181_low_9
Description: NF8181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8181_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 23 - 380
Target Start/End: Original strand, 45975699 - 45976059
Alignment:
| Q |
23 |
aagaagatacccactttgatggcacttaaagccgttgaaccaagcgaggcatctatggaggtggtgcttgtcgataggcaagaagattctcgcttgaagc |
122 |
Q |
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| T |
45975699 |
aagaagatacccactttgatggcacttaaagccgttgaaccaagcgaggcatctatggaggtggtgcttgtcgataggcaagaagattctcgcttgaagc |
45975798 |
T |
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| Q |
123 |
tacttcatgataaagctcaggagttgtatcgttcttcggagaacaccttggtgtttgttgaacaactgggaaaacttgttgccataaatatggggtatat |
222 |
Q |
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| T |
45975799 |
tacttcatgataaagctcaggagttgtatcgttcttcagagaacaccttggtgtttgttgaacaactgggaaaacttgttgccataaatatggggtatat |
45975898 |
T |
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| Q |
223 |
atagtagtattcttcaatataa---tcacttttttccttattatgttgttgctattctgagtgtgtatattattgaaggggtatattcccggtggagcga |
319 |
Q |
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| T |
45975899 |
atagtagtattcttcaatataatcttcacttttttccttattatgttgttgctattctgagtgtgtatattattgaaggggtatattcccggtggagcga |
45975998 |
T |
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| Q |
320 |
ggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtg |
380 |
Q |
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| T |
45975999 |
ggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtg |
45976059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 372
Target Start/End: Complemental strand, 28052450 - 28052383
Alignment:
| Q |
305 |
ttcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttca |
372 |
Q |
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| T |
28052450 |
ttccctgtggagcaaggagatctgcaaaaaaggtggaagatggttagtaagcggttgaggaattttca |
28052383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 28052763 - 28052682
Alignment:
| Q |
123 |
tacttcatgataaagctcaggagttgtatcgttcttcggagaacaccttggtgtttgttgaacaactgggaaaacttgttgc |
204 |
Q |
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| T |
28052763 |
tacttcaagataaagctcaagagttgtattctgcttctgagaatgccttggtgctcgttgaaaagcttggaaaacttgttgc |
28052682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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