View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8182_high_1 (Length: 543)
Name: NF8182_high_1
Description: NF8182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8182_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 24 - 530
Target Start/End: Original strand, 36051114 - 36051623
Alignment:
| Q |
24 |
agaaacggaggaaacatgtgaatcctcaaagttggaggtgaagc---cttcccgagtttccgattgtgttgttgatctcgtactagacataccaggtgaa |
120 |
Q |
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| T |
36051114 |
agaaacggaggaagcatgtgaatcctcaaagttggaggtgaagcagccttcccgagtttccgattgtgttgttgatctcgtactagacataccaggtgaa |
36051213 |
T |
|
| Q |
121 |
cacaatcaagatcttccaccatgctcaaagcttgttgagaagccctccatcactcacgattatgttgattccatagctttcattacgggtgaacaggatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051214 |
cacaatcaagatcttccaccatgctcaaagcttgttgagaagccctccatcactcacgattatgttgattccatagctttcattacgggtgaacaggatc |
36051313 |
T |
|
| Q |
221 |
tggattccccactaaaattggaagttcaggttgttcaactgaaaattgcagattcctttgatggcgtacaacagaggagcgtcatcgtcatgacgggaga |
320 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051314 |
tggattccccactaaaatcggaagttcaggttgttcaactggaaattgcagattccattgatggcgtacaacagaggagcgtcatcgtcatgacgggaga |
36051413 |
T |
|
| Q |
321 |
caagaaatttagcaatcctgctctcggtccacaatctccaaaaccgctagacactgccttggctccaccgttgccgccgccgaaaccgcgggatggaagt |
420 |
Q |
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| T |
36051414 |
caagaaatttagcaatcctgctctcggtccacaatctccaaaaccgctagacactgccttggctccaccgttgccgccgccgaaaccgccggatggaagt |
36051513 |
T |
|
| Q |
421 |
gttgctgcaggtatcgatccattatatgctcatgttactttacacaaatactcaccacccacgaaattgtcatcaggtaccgcagaaaacttaacaaacc |
520 |
Q |
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| T |
36051514 |
gttgctgcaggtatcgatccattatatgctcctgttactttacacaaatactcaccacccatgaaattgtcatcaggtaccgcagaaaacttaacaaacc |
36051613 |
T |
|
| Q |
521 |
tgatgtccat |
530 |
Q |
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| T |
36051614 |
tgatctccat |
36051623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 511
Target Start/End: Original strand, 30453622 - 30453739
Alignment:
| Q |
394 |
ccgccgccgaaaccgcgggatggaagtgttgctgcaggtatcgatccattatatgctcatgttactttacacaaatactcaccacccacgaaattgtcat |
493 |
Q |
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|||||||||||||| | ||| ||||||||||| |||||||| |||| |||| ||||||||||||||||||| ||| | ||||||| ||||| || |
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| T |
30453622 |
ccgccgccgaaaccaccagatcgaagtgttgctacaggtatcaatcctttatgcgctcatgttactttacacagttacccgacacccactgtattgttat |
30453721 |
T |
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| Q |
494 |
caggtaccgcagaaaact |
511 |
Q |
| |
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|||||||||||||||| |
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| T |
30453722 |
ttggtaccgcagaaaact |
30453739 |
T |
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