View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8182_low_3 (Length: 440)
Name: NF8182_low_3
Description: NF8182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8182_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 29450289 - 29450642
Alignment:
| Q |
17 |
aggtcccaacccttaattaagaccttaaactcttgtatattgcccccaccttatatatcacatgggaccatcatcaccacccatttttctcgttcatttt |
116 |
Q |
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| T |
29450289 |
aggtcccaacccttaattaagaccttaaactcttgtatattgcccccaccttatatatcacatgggaccatcatcaccacccatttttctcgttcatttt |
29450388 |
T |
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| Q |
117 |
ctacgttattgtactaactaatactagttaataatggacaagttaattgagtttgattgttaataaacaattctactattgaaggacacttctcaaatgg |
216 |
Q |
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| T |
29450389 |
ctacgttattgtacaaaataatactacttaataatggacaagttaattgagtttgattgttaataaac-agtctactattgaaggacacttctcaaatgg |
29450487 |
T |
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| Q |
217 |
ttaattaggattgtttgattagatacaattgagattaatcaaagta-atggttcaactcaagtcattaataggaatcttaagttaaggttaaagtagacg |
315 |
Q |
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||||||||||||||||||||||||| ||| ||| |||||||| ||| |||| |||||||||||||| || | ||||||||||||||||| ||| ||| | |
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| T |
29450488 |
ttaattaggattgtttgattagatataatggaggttaatcaacgtagatggctcaactcaagtcatcaacaagaatcttaagttaaggtcaaaataggcc |
29450587 |
T |
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| Q |
316 |
aataacaaaatttattcataatcgcctcctattaaaatcacaacactaatatgtg |
370 |
Q |
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| ||||| ||||||||||||||| ||||||||||||||||| |||||| ||||| |
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| T |
29450588 |
attaacataatttattcataatcatctcctattaaaatcacagcactaacatgtg |
29450642 |
T |
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