View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8182_low_8 (Length: 214)
Name: NF8182_low_8
Description: NF8182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8182_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 19529904 - 19530024
Alignment:
| Q |
8 |
agaagcagagaagatttaaccaaagaagcaacataaataatagacaaatatagaaaaggcattaaaaacacatgttgcttaaagtaaccggcaatgatta |
107 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19529904 |
agaaacagacaagatttaaccaaagaagcaacataaataatagacaaatataggaaaggcattaaaaacacatgttgcttaaagtaaccggcaatgatta |
19530003 |
T |
|
| Q |
108 |
tggttggtcattacaatattc |
128 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
19530004 |
tggctggtcattacaatattc |
19530024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University