View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8183_high_2 (Length: 257)
Name: NF8183_high_2
Description: NF8183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8183_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 28411333 - 28411087
Alignment:
| Q |
1 |
tgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaattgttgataacaatcttgttctgcatac |
100 |
Q |
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| T |
28411333 |
tgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaattgtcgataacaatcttgttctgcatac |
28411234 |
T |
|
| Q |
101 |
atctatctcttgctagtatttcctgctcaatgtagctctctcatatatgtcatcgtctgacatcgatacatgcggttatactcaaatatttccacttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411233 |
atctatctcttgctagtatttcctgctcaatgtagcactctcatatatgtcatcgtctgacatcgatacatgcggttatactcaaatatttccacttttt |
28411134 |
T |
|
| Q |
201 |
caaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411133 |
caaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
28411087 |
T |
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