View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8183_high_4 (Length: 241)
Name: NF8183_high_4
Description: NF8183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8183_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 3564119 - 3564352
Alignment:
| Q |
8 |
tggacatcaccttatctgctataggttgcagatagcaagcttttggtctccccttgaatataggcacccccaaatagttgaatggcaatgttccaactgt |
107 |
Q |
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| T |
3564119 |
tggacttcaccttatctgctataggttgcagatagcaagcttttggtctccccttgaatatagggacccccaaatagttgaatggcaatgttccaactgt |
3564218 |
T |
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| Q |
108 |
gaaaccaagtaggttgatgatgttttggagtgtagttggtgagattccaccagaataaattgttgatttcctgcaacttatcacttgaccagcactatta |
207 |
Q |
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| T |
3564219 |
gaaaccaagtaggttgatgatgttttggagtctagttggtgagattccaccagaataaattgttgatttcctgcagcttatcacttgactagcactatta |
3564318 |
T |
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| Q |
208 |
gcatactttgtaaacaaatctctaagagcttcaa |
241 |
Q |
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| T |
3564319 |
gcatactttgtaaacaaatctctaagagcttcaa |
3564352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 9750343 - 9750457
Alignment:
| Q |
115 |
agtaggttgatgatgttttggagtgtagttggtgagattccaccagaataaattgttgatttcctgcaacttatcacttgaccagcactattagcatact |
214 |
Q |
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| T |
9750343 |
agtaagttgatgatattttggagtcttgttggtgagattcctcctgcataaatagttgacttcatgctatttatcacttaaccaacactattagcatact |
9750442 |
T |
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| Q |
215 |
ttgtaaacaaatctc |
229 |
Q |
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| T |
9750443 |
ttgtaaataaatctc |
9750457 |
T |
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