View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8183_low_1 (Length: 431)
Name: NF8183_low_1
Description: NF8183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8183_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 36792785 - 36792681
Alignment:
| Q |
97 |
tttttcaatcggacttcgagtcttgatttattatttatttttgaaagagagtctcaatgatagttttattacaatgtaaaattgttctattatgtgaaag |
196 |
Q |
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| T |
36792785 |
tttttcaatcggacttcgagtcttgatttattatttatttttgaa-gagagtctcaatgatagttttattacaatgtaaaattgttctattatgtgaaag |
36792687 |
T |
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| Q |
197 |
agaaat |
202 |
Q |
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|||||| |
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| T |
36792686 |
agaaat |
36792681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 352 - 425
Target Start/End: Complemental strand, 36792682 - 36792609
Alignment:
| Q |
352 |
atgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaacttcattctttcttctc |
425 |
Q |
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| T |
36792682 |
atgaagaaatttatgagatggtatcatgtggcagccacactagattgaatccaaaaacttcattctttcttctc |
36792609 |
T |
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Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 6874315 - 6874204
Alignment:
| Q |
312 |
tcacctaaaatttaagtgggcaataattaaaagtcattagatgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaactt |
411 |
Q |
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| T |
6874315 |
tcacctaaaatttgagtggaccataattaaaagccattagatgaagaaacttatgagatggtatcatgtggtagccacactggatcgaacccaacaattt |
6874216 |
T |
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| Q |
412 |
cattctttcttc |
423 |
Q |
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| T |
6874215 |
cattctttcttc |
6874204 |
T |
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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 5346271 - 5346190
Alignment:
| Q |
337 |
attaaaagtcattagatgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaacttcattctt |
418 |
Q |
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| T |
5346271 |
attaaaagtcattagatgaaggaacttatgagattgtatcatgtgttagccacactagattggacccaacaaattctttctt |
5346190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 41191608 - 41191686
Alignment:
| Q |
337 |
attaaaagtcattagatgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaacttcatt |
415 |
Q |
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|||||||| |||||||||||| ||||||| |||||||||||||||| | |||||| |||| | |||||| ||||||||| |
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| T |
41191608 |
attaaaagccattagatgaaggaacttataagatggtatcatgtggtatccacaccagatcggacccaacaacttcatt |
41191686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 2678126 - 2678094
Alignment:
| Q |
279 |
aataatttttatgataattttctctttcatact |
311 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2678126 |
aataatttttatgataattttctctttcatact |
2678094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 53681140 - 53681172
Alignment:
| Q |
279 |
aataatttttatgataattttctctttcatact |
311 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
53681140 |
aataatttttgtgataattttctctttcatact |
53681172 |
T |
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