View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8183_low_2 (Length: 416)
Name: NF8183_low_2
Description: NF8183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8183_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 96 - 410
Target Start/End: Complemental strand, 29475482 - 29475174
Alignment:
| Q |
96 |
aaattctaaaccttactaaaattaccagttcttgttaccttgcaggtttcacatgcggttcctgaagtttttcatgtatggacgacatggagactagttg |
195 |
Q |
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| T |
29475482 |
aaattctaaaccttactaaaattaacagttctttttaccttgcaggttcgacttgcggatcctgaagtttttaatctat------catggagagtagttg |
29475389 |
T |
|
| Q |
196 |
gccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagttctttctttatgg |
295 |
Q |
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| T |
29475388 |
gccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaaaattgaaagctttccagatctttctttatgg |
29475289 |
T |
|
| Q |
296 |
ggtgttgtccttagctatcttcaccaccatattgtttgcaaaacagtcttcacgtaccactcgccatgttcaactcaaaacttactcgagctttctcgtt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29475288 |
ggtgttgtccttagctatcttcaccaccatattgtttgcaaaacagtcttcacgtaccactcgccatgttcaactcaaaacttactcgagctttctcgtt |
29475189 |
T |
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| Q |
396 |
ttgatgtccatctca |
410 |
Q |
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|||||| ||||||| |
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| T |
29475188 |
ttgatgatcatctca |
29475174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 348
Target Start/End: Complemental strand, 29529077 - 29528912
Alignment:
| Q |
183 |
tggagactagttggccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagt |
282 |
Q |
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| T |
29529077 |
tggagagtagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaaggtggaaacctttcaagt |
29528978 |
T |
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| Q |
283 |
tctttctttatggggtgttgtccttagctatcttcaccaccatattgtttgcaaaacagtcttcac |
348 |
Q |
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| T |
29528977 |
tctttctctatggagtgtcatctttagtcatctttaccaccgtattgtttgcaaagcagtcatcac |
29528912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 183 - 342
Target Start/End: Original strand, 29612391 - 29612550
Alignment:
| Q |
183 |
tggagactagttggccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagt |
282 |
Q |
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|||||||||||||||||| | |||||| || |||| || | |||||||||| |||||||||||||||||| |||||| |||||||||| | || ||| |
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| T |
29612391 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaacattgtcaagt |
29612490 |
T |
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| Q |
283 |
tctttctttatggggtgttgtccttagctatcttcaccaccatattgtttgcaaaacagt |
342 |
Q |
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||| ||| ||||| ||||| ||||| |||||||| |||||||||||||||| ||| |||| |
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| T |
29612491 |
tctctctgtatggagtgttttccttggctatctttaccaccatattgtttgtaaagcagt |
29612550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 375
Target Start/End: Original strand, 28183531 - 28183730
Alignment:
| Q |
176 |
gacgacatggagactagttggccttatatcaagtatagttggtctggtttgttatgctctgagcccttctttcaatcgattaattagaagatggaaagct |
275 |
Q |
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| T |
28183531 |
gacgacttggagagtaattggttttatgtcatgtattgttggcttgttatgttatgctctaagcccttctttcaatcgattatttggaaggtggaatcct |
28183630 |
T |
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| Q |
276 |
ttccagttctttctttatggggtgttgtccttagctatcttcaccaccatattgtttgcaaaacagtcttcacgtaccactcgccatgttcaactcaaaa |
375 |
Q |
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||| || ||||||| |||| | |||||||||||| ||||| ||||||||||| ||| ||| ||| | |||| | |||| |||||||||||||| |||| |
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| T |
28183631 |
ttcaaggtctttctctatgtagcgttgtccttagccatcttaaccaccatattagttgtaaagcaggcatcaccttccacgcgccatgttcaactaaaaa |
28183730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 29527032 - 29526915
Alignment:
| Q |
226 |
gttatgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagttctttctttatggggtgttgtccttagctatcttcaccaccat |
325 |
Q |
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|||||||||| |||||||||||||||||||| || |||| ||||| ||||| || ||||||| |||| |||||||||||||| ||||| || ||||| |
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| T |
29527032 |
gttatgctctaggcccttctttcaatcgattatttggaaggtggaatcctttcaaggtctttctctatgtagtgttgtccttagccatcttaacaaccat |
29526933 |
T |
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| Q |
326 |
attgtttgcaaaacagtc |
343 |
Q |
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||| |||||||| ||||| |
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| T |
29526932 |
attatttgcaaagcagtc |
29526915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 333
Target Start/End: Original strand, 29524648 - 29524752
Alignment:
| Q |
229 |
atgctctgagcccttctttcaatcgattaattagaagatggaaagctttccagttctttctttatggggtgttgtccttagctatcttcaccaccatatt |
328 |
Q |
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| T |
29524648 |
atgctcagagccattctttcaatcgtttcattggaaaatggaacactctcaagttctttctgtatggggtgttttccttggttatctttactaccatgtt |
29524747 |
T |
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| Q |
329 |
gtttg |
333 |
Q |
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||||| |
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| T |
29524748 |
gtttg |
29524752 |
T |
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