View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8183_low_3 (Length: 366)
Name: NF8183_low_3
Description: NF8183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8183_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 6 - 350
Target Start/End: Complemental strand, 24788805 - 24788461
Alignment:
| Q |
6 |
atgaaataattgggaagaacaaacctgcaaggctcttcctcagaagtctcttacccttggacccttttcgtgtacatgatttaacttttgtttgcccata |
105 |
Q |
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| T |
24788805 |
atgagataattgggaagtacaaacctgcaaggctcttcctcagaagtctcttacccttggacccttttcgcatacatgatttaactattgtttgcccatt |
24788706 |
T |
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| Q |
106 |
aacaggtgccgcagaaccaattgtcttttcctgtaccagaggacagtgattcaattctaaaagcaactagtcgtaaaaaataatattgtaatcaatcaga |
205 |
Q |
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| T |
24788705 |
aacaggtgccgcagaaccaattgtcttttcctgtaccagaggacagtgattcaattctaaaagcaactagtcgttaaaaataatattgtaatcaatcaga |
24788606 |
T |
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| Q |
206 |
ccatcatctagaataatattcttaggcttatgtataattatttttgtaagatcttaattcataaaccaattaaaccctattacatttgtgatctagcatg |
305 |
Q |
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| T |
24788605 |
ccatcatctagaataatattcttaggcttatgtataattatttttgtaagatcttaattcataaaccaattaaaccctattacatttgtgatctagcatg |
24788506 |
T |
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| Q |
306 |
gtctggtagnnnnnnnnntagcggcaaccaaaggtgtgaaattct |
350 |
Q |
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| T |
24788505 |
gtctggtagaaaaaaaaatagcggcaaccaaaggtgtgaaattct |
24788461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 24300513 - 24300687
Alignment:
| Q |
54 |
tcttacccttggacccttttcgtgtacatgatttaacttttgtttgcccataaacaggtgccgcagaaccaattgtcttttcctgtaccagaggacagtg |
153 |
Q |
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| T |
24300513 |
tcttacccttggacactttctgtgcacatactttaactctcttttgcccattaacaggtgccacagaaccaactgtgttttcctgtatcagaagacaggg |
24300612 |
T |
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| Q |
154 |
attcaattctaaaagc--aactagtcgtaaaaaataatattgtaatcaatcagaccatcatctagaataatattc |
226 |
Q |
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| T |
24300613 |
attcaattctaaaagcaaaactagccgaaaaaaataatattggcatcaatcagaccaacatctagaataaaattc |
24300687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 24300741 - 24300785
Alignment:
| Q |
269 |
aaccaattaaaccctattacatttgtgatctagcatggtctggta |
313 |
Q |
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| T |
24300741 |
aaccaattaaaccctattacatatgtgctttagcatggtctggta |
24300785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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