View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8184_high_1 (Length: 451)
Name: NF8184_high_1
Description: NF8184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8184_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 35 - 437
Target Start/End: Original strand, 50639338 - 50639739
Alignment:
| Q |
35 |
catatatcatgaaaaggcagcacatattgtagaatatcaaaatatcgttacaaattcaaaacaaaaagcatttgttcctttttattcatcgcaagcttca |
134 |
Q |
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| T |
50639338 |
catatatcatgaaaaggcagcacatattgtagaatatcaaaatatcgttacaaattcaaaacaaaaagcatttgttcctttttattcatcgcaagcttca |
50639437 |
T |
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| Q |
135 |
tctacaactacataaaatctggaatcatcaaatttttcacatgcgtttttccaatattaaaaataannnnnnnnngcaagatctccttttaaatttgatg |
234 |
Q |
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| T |
50639438 |
tctacaactacataaaatctggaatcatcaaatttttcacatgtgtttttccaatattaaaaataaaaagaatttgcaagatctccttttaaatttgatg |
50639537 |
T |
|
| Q |
235 |
cgaagaatactctgaatttttgagtannnnnnnncaagcaaaatgcttt-attttgc-aacatgtgtttcactactactaaatcatgatatattgatatg |
332 |
Q |
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| T |
50639538 |
cgaagaatactcagaatttttgagta---tttttcaagcaaaatgctttcattttgcaaacatgtgtttcactactactaaatcatgatatattgatatg |
50639634 |
T |
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| Q |
333 |
ttcaggataaaaatgatcattgtaaatggcattcctcatttttaaatgtaactcttacaacttcattgttaaaagatgtaagagttttatcaacttaaga |
432 |
Q |
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| T |
50639635 |
ttcaggataaaaatgatcattgtaaatagcattcctcatttttaaatgtaactcttacaacttcattgttaaaagatgtaagagttttatcaacttaaga |
50639734 |
T |
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| Q |
433 |
aaatt |
437 |
Q |
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| T |
50639735 |
aaatt |
50639739 |
T |
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