View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8184_high_4 (Length: 323)
Name: NF8184_high_4
Description: NF8184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8184_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 38882517 - 38882230
Alignment:
| Q |
19 |
gtttggttacctgaaccaatttggtgcgaaacaaattgaggaataaatcatcaataacccctggcttgtattcattctttggagctgctgcaactcccac |
118 |
Q |
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| T |
38882517 |
gtttggttacctgaaccaatttggtgcgaaacaaattgaggaacaaatcatcaataacccctggcttgtattcactctttggagctgctgcaactcccac |
38882418 |
T |
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| Q |
119 |
ctaattcaaattcaatcannnnnnnnnnnnnnnnnnnaaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaaccgttttgggtcccgacga |
218 |
Q |
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| T |
38882417 |
ctaattcaaattcaatcaacacacacacacacaca--aaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaaccgttttgggtcccgacga |
38882320 |
T |
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| Q |
219 |
tgaagaggctgaaacgcagaactgacgtatacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccgccttcat |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882319 |
tgaagaggctgaaacgcagaactgacgtttacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccgccttcat |
38882230 |
T |
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