View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8184_high_5 (Length: 322)
Name: NF8184_high_5
Description: NF8184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8184_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 12934883 - 12934593
Alignment:
| Q |
15 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12934883 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
12934784 |
T |
|
| Q |
115 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggctacacattttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12934783 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggctacacattttt |
12934684 |
T |
|
| Q |
215 |
gcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12934683 |
gcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatc |
12934593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 17123650 - 17123537
Alignment:
| Q |
15 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataac--------gtacctttcct |
106 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||| |
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| T |
17123650 |
gacatcaatatactttgtacaagagtggtacatcgcattcttactcgaatccaaaacgctttgattatcgcaatggataacgacatgaagtacctttcct |
17123551 |
T |
|
| Q |
107 |
gcttcattcccaat |
120 |
Q |
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|||||||||||||| |
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| T |
17123550 |
gcttcattcccaat |
17123537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 14178153 - 14177863
Alignment:
| Q |
15 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14178153 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
14178054 |
T |
|
| Q |
115 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggctacacattttt |
214 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
14178053 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggctacacattttt |
14177954 |
T |
|
| Q |
215 |
gcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14177953 |
gcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatc |
14177863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 28607720 - 28608010
Alignment:
| Q |
15 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607720 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
28607819 |
T |
|
| Q |
115 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggctacacattttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
28607820 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcggttgttgataaggctacacattttt |
28607919 |
T |
|
| Q |
215 |
gcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607920 |
gcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatc |
28608010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 15300669 - 15300379
Alignment:
| Q |
15 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15300669 |
gacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcacaatggataacgtacctttcctgcttcatt |
15300570 |
T |
|
| Q |
115 |
cccaattgatcaagaaatctttttagccaaagcatttccttccctgcttcagccatggcaatatattttgcctcagttgttgataaggctacacattttt |
214 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15300569 |
cccaattgatcatgaattctttttagccaaagcatttccttccctgcttcagccatggcaatatattctgcctcagttgttgataaggctacacattttt |
15300470 |
T |
|
| Q |
215 |
gcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatc |
305 |
Q |
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|
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15300469 |
gcaatttagattgccaagatatagctcaccctgcaaaagcaaacacaattcctgaagcagactttctaccatccaggtcacctgccatatc |
15300379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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