View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8184_low_2 (Length: 438)
Name: NF8184_low_2
Description: NF8184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8184_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 9368036 - 9368442
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9368036 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
9368135 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9368136 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaattgcagtcagttgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
9368235 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9368236 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
9368335 |
T |
|
| Q |
316 |
tgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgatag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9368336 |
tgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcaatag |
9368435 |
T |
|
| Q |
416 |
aaataca |
422 |
Q |
| |
|
||||||| |
|
|
| T |
9368436 |
aaataca |
9368442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 9292615 - 9292221
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||||||||||| ||| ||||||| ||||||||||| |||||||| |||||| |||| |||||||| | |
|
|
| T |
9292615 |
atgaacttgtctatctttcaatcagttttgtctttcttggttggatcttcatcaaagtcaaaggcaacaaaatggttcaaagtgacaaagttgatgcaaa |
9292516 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | || ||||||||||||| ||||||||||||||||| |||||| | || |||||||| |||||||||||||| || ||||| |||||| |
|
|
| T |
9292515 |
agagggtaa---catgtgaagagaacatggagaatttcaatgaattgcagtgtgtcgaagcatctttaagaaccctttcaagtgatggttctattgtt-- |
9292421 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9292420 |
-------gcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaagggtttagagaatatatttaggcgtttggttaaaactagagtc |
9292328 |
T |
|
| Q |
316 |
tgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgatag |
415 |
Q |
| |
|
|||||||||||||| | |||||||||||| || ||||| || || ||||||||||||| ||| |||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
9292327 |
tgtcttttgaacatcataactctatcttagggacctgctgagtatagaaaaattttgcagagtcaatttgtatatatatacgatgtatacaattcaatag |
9292228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 9305055 - 9304661
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||| |||||||||||| ||||||| | |||||||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||| |||||||| | |
|
|
| T |
9305055 |
atgaacttgtctatctttcgatcccttttttctttcttggttggatcttcatcaaagtcaaaggcaaccaaatggttgaaagtagcaaagttgatgcaaa |
9304956 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | || |||| |||||||| ||||||||||||||||| |||||| |||| |||||||| |||||||||||||| |||| ||| | |||| |
|
|
| T |
9304955 |
agagggtaa---catgcgaagagaacatggagaatttcaatgaattgcagtgtgttgaagcatctttaagaaccctttcaagtgaagattctaatgtt-- |
9304861 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9304860 |
-------gcacatgaaagatttgaggctttcgagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcgtttggttaaaactagagtt |
9304768 |
T |
|
| Q |
316 |
tgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgatag |
415 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| | ||||| ||||| |||||||||| ||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
9304767 |
tgtcttttgaacatcatgactctatcttaggaatctgatgaggattgaaaatttttgcacagacaatatgtatataaatattatgtatacaatttaatag |
9304668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 9373942 - 9374330
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||| ||||||||||||||||| || | |||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| |||| |||||||| | |
|
|
| T |
9373942 |
atgaacttgtctatctttcaatccattttctctttcttggttggatcttcatcaaagtcaaaggcaaccaaatggttgaaagtgacaaagttgatgcata |
9374041 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | | ||| ||||||||| | || |||||||||||| || | | |||| |||||||| |||||||||||||| |||||||| | |||| |
|
|
| T |
9374042 |
agagggtatcctc---tgaagagaactcagacaatttcaatgaattggaatgtgttgaagcatctttaagaaccctttcaagtgaaggttctaatgtt-- |
9374136 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9374137 |
-------gcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggtgtttggttaaaactagagtc |
9374229 |
T |
|
| Q |
316 |
tgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgatag |
415 |
Q |
| |
|
||||||||||| || |||||||||||||| ||| || | ||| | ||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
9374230 |
tgtcttttgaatatcatgactctatcttagggatttgatgaggcttgaaaaattttgtacagttaatttgtatataaatac--tgtatacaattcaatag |
9374327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 9301436 - 9301044
Alignment:
| Q |
17 |
tgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcacaa |
116 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||||||||| ||| ||||||| ||||||||||| |||||||| |||||| |||| |||||||| || |
|
|
| T |
9301436 |
tgaacttgtctatctttcaatctgttttgtctttcttggttggatcttcatcaaagtcaaaggcaacaaaatggttgaaagtgacaaagttgatgcaaaa |
9301337 |
T |
|
| Q |
117 |
aacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttca |
216 |
Q |
| |
|
| | || ||||||| ||||| ||||||||||||||||| |||||| | || |||||||||||||||||| |||| |||||||| | ||| |
|
|
| T |
9301336 |
gagggtaa---catgtgaggagaacatggagaatttcaatgaattgcagtgtgtggaagcatctttgagaacccttacaagtgaaggttctaacgtt--- |
9301243 |
T |
|
| Q |
217 |
aaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagttt |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
9301242 |
------gcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcgtttggttaaaactagagtct |
9301149 |
T |
|
| Q |
317 |
gtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgataga |
416 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||| | ||||| | ||| ||||||||||| ||| |||||||||||| |||||||| ||||| |||| |
|
|
| T |
9301148 |
gtcttttgaacatcataactctatcttagggatctgatgaggattg-aaatttttgcacagtcaatctgtatataaatattatgtatataattcaatagt |
9301050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 9351581 - 9351187
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||| |||||||||||| ||||||| | |||||||||||||| ||| ||||||| ||||||||| | |||||||| |||||| |||| |||||||| | |
|
|
| T |
9351581 |
atgaacttgtctatctttcgatcccttttttctttcttggttggatcttcatcaaagtcaaaggcagcaaaatggttaaaagtgacaaagttgatgcaaa |
9351482 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | || ||||||||||||| |||||| |||||||||| | |||| | || |||||||| ||||||||| ||| |||||||||| |||| |
|
|
| T |
9351481 |
agagggtaa---catgtgaagagaacatggagagtttcaatgaattccagtgtgtggaagcatctttaagaacccttataagtgaaggttcaaatgtt-- |
9351387 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9351386 |
-------gcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttaggcgtttggttaaaactagagtc |
9351294 |
T |
|
| Q |
316 |
tgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgatag |
415 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| || | ||||| |||| ||||||||||| ||| |||||| ||||| |||||||||||||| |||| |
|
|
| T |
9351293 |
tgtcttttgaacatcatgactctatcttagggatttgataaggattgaaattttttgcacagtcaatctgtatacaaatattatgtatacaattcaatag |
9351194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 9331853 - 9331459
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||| |||||| ||||| ||||||| | |||||||||||||| ||| ||||||| ||||||||| | |||||||| |||||| |||| |||||||| | |
|
|
| T |
9331853 |
atgaacttgtctacctttcgatcccttttttctttcttggttggatcttcatcaaagtcaaaggcagcaaaatggttaaaagtgacaaagttgatgcaaa |
9331754 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | || ||||||||||||| |||||| |||||||||| | |||| | || |||||||| ||||||||| ||| |||||||||| |||| |
|
|
| T |
9331753 |
agagggtaa---catgtgaagagaacatggagagtttcaatgaattccagtgtgtggaagcatctttaagaacccttataagtgaaggttcaaatgtt-- |
9331659 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9331658 |
-------gcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttaggcgtttggttaaaactagagtc |
9331566 |
T |
|
| Q |
316 |
tgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgatag |
415 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| || | ||||| |||| ||||||||||| ||| |||||| ||||| |||||||||||||| |||| |
|
|
| T |
9331565 |
tgtcttttgaacatcatgactctatcttagggatttgataaggattgaaattttttgcacagtcaatctgtatacaaatattatgtatacaattcaatag |
9331466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 9297222 - 9296898
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||||||||||||| ||| ||||||| ||||||||||| |||||||| |||||| |||| |||||||| | |
|
|
| T |
9297222 |
atgaacttgtctatctttcaatccatattgtctttcttggttggatcttcatcaaagtcaaaggcaacaaaatggttgaaagtgacaaagttgatgcaaa |
9297123 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | || |||||||||||| | ||||||||||||||||| |||||| | || ||||| || ||||||||| ||| |||||||| |||||| |
|
|
| T |
9297122 |
agagggtaa---catgtgaagagaggatggagaatttcaatgaattgcagtgtgtggaagcatcgttaagaacccttataagtgaaggttctattgtt-- |
9297028 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9297027 |
-------gcacatgatagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcatttggttaaaactagagtc |
9296935 |
T |
|
| Q |
316 |
tgtcttttgaacattgtgactctatcttagagatctg |
352 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| |
|
|
| T |
9296934 |
tgtcttttgaacatcatgactctatcttagggatctg |
9296898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 46 - 329
Target Start/End: Original strand, 9349468 - 9349742
Alignment:
| Q |
46 |
tctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcacaaaacgacaatctcatgtgaagagaagttgg |
145 |
Q |
| |
|
||||||||| |||| ||| ||||||| ||||||||||| |||||||| |||||| |||| |||||||| || | | | ||||||||| |||| |||| |
|
|
| T |
9349468 |
tctttcttgattgggtctccatcaaagtcaaaggcaacaaaatggttgaaagtgacaaagttgatgcaaaagagagtagtatcatgtgaaaagaatttgg |
9349567 |
T |
|
| Q |
146 |
agaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttcaaaggatgcacgtgaaagatttgaggcttt |
245 |
Q |
| |
|
|||||||||||||| |||||| | || |||||||||||||||||| ||| |||||||| | |||| |||| |||||||||||| ||||| |
|
|
| T |
9349568 |
agaatttcaatgaattgcagtgtgtggaagcatctttgagaacccttataagtgaaggttctaatgtt---------gcacatgaaagatttgaagcttt |
9349658 |
T |
|
| Q |
246 |
ggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtttgtcttttgaacat |
329 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
9349659 |
ggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggggtttggttaaaactagagtctgtcttttgaacat |
9349742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 9356820 - 9357121
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||||||||| ||| ||||||| ||||||||| | |||||||| |||||| |||| |||||||| | |
|
|
| T |
9356820 |
atgaacttgtctatctttcaatcccttttttctttcttggttggatcttcatcaaagtcaaaggcagcaaaatggttgaaagtgacaaagttgatgcaaa |
9356919 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | || ||||||||||||| |||||| | |||||||| | |||| | || |||||||| ||||||||| ||| |||||||| | ||| |
|
|
| T |
9356920 |
agagggtaa---catgtgaagagaacatggagagtatcaatgaattccagtgtgtggaagcatctttaagaacccttataagtgaaggttctaacgtt-- |
9357014 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9357015 |
-------gcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaagggtttagagaatatatttaggtgtttggttaaaactagagtc |
9357107 |
T |
|
| Q |
316 |
tgtcttttgaacat |
329 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9357108 |
tgtcttttgaacat |
9357121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 9288083 - 9287791
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||| || ||||||| |||||||||||||||||||| || |||||||| | |
|
|
| T |
9288083 |
atgaacatgtctatctttcaatccattttgtctttcttggttggatcatcatcaaagtcaaaggcaaccaaatggttgaac---------ttgatgcata |
9287993 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | ||| |||||||||||| ||||||||||||||||| |||| | | || |||||||||| ||||||| ||| |||||||| | |||| |
|
|
| T |
9287992 |
agagggtaat---atgtgaagagaacatggagaatttcaatgaattgcaatgtgtggaagcatctttgaaaacccttataagtgaaggttctaatgtt-- |
9287898 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
9287897 |
-------gcacatgaaagatttgaggctttggagaatgcaattgaaatgatagaaaatggtttggagaatgtatttaggcgtttggttaaaactagagtc |
9287805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 9329209 - 9329498
Alignment:
| Q |
16 |
atgaacatgtctatctttcaatcccttctgtctttcttggttggttctgcatcaaaatcaaaggcaaccaaatggtttaaagtggcaaaattgatgcaca |
115 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||| |||||||| | |
|
|
| T |
9329209 |
atgaacatgtctatctttcaatccattttgtgtttcttggttggggctgcatcaaagtcaaaggcaaccaaatggttgaaagtagcaaagttgatgcata |
9329308 |
T |
|
| Q |
116 |
aaacgacaatctcatgtgaagagaagttggagaatttcaatgaactgcagtcaattgatgcatctttgagaaccctttcaagagaaggttcaattgtttc |
215 |
Q |
| |
|
| | | || ||||||||||||| ||||||||||||||||| || ||| | || |||||||| ||| |||||||| | |||| |
|
|
| T |
9329309 |
agaggggaa---catgtgaagagaacatggagaatttcaatgaattggagtgtgtggaagcatcttt------------aagtgaaggttctaatgtt-- |
9329391 |
T |
|
| Q |
216 |
aaaggatgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtt |
315 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
9329392 |
-------gcacatgaaagatttgaggctttggagaatgcagttgaaagtatagaaaatggtttagaaaatatatttaggcgtttggttaaaactagagtc |
9329484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 230 - 422
Target Start/End: Original strand, 9361438 - 9361628
Alignment:
| Q |
230 |
aaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactagagtttgtcttttgaacat |
329 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | | ||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
9361438 |
aaagatttgaggctttggagaaagcaattgaaaagctagaaaatggtttggagaatgtatttagccatttaattaaaactagagtttgtcttttgaacat |
9361537 |
T |
|
| Q |
330 |
tgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtatataaatactatgtatacaattcgatagaaataca |
422 |
Q |
| |
|
||||||||||||||| || || | ||||| ||||||||||||||||| || ||||||||||| |||| |||||||| |||| |||||| |
|
|
| T |
9361538 |
catgactctatcttagaaatttgatgaggattgaaaaattttgcacagtcgatccgtatataaatattatg--tacaattcaatagcaataca |
9361628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 9361258 - 9361298
Alignment:
| Q |
19 |
aacatgtctatctttcaatcccttctgtctttcttggttgg |
59 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
9361258 |
aacatgtctatctttcaatccattttgtctttcttggttgg |
9361298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 422
Target Start/End: Complemental strand, 10412798 - 10412667
Alignment:
| Q |
290 |
ttaggtgtttggttaaaactagagtttgtcttttgaacattgtgactctatcttagagatctgctcaggatcgaaaaattttgcacagttaatttgtata |
389 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||| || ||||||||||||||| ||| || | ||||| |||||| |||| ||| | ||| |||| | |
|
|
| T |
10412798 |
ttaggcgtttggttaaaactagagtcggtcttttgaatatcgtgactctatcttagggatttgatgaggattgaaaaaatttggaca-tcaatctgtaaa |
10412700 |
T |
|
| Q |
390 |
taaatactatgtatacaattcgatagaaataca |
422 |
Q |
| |
|
|||||| |||||||| ||||| |||| |||||| |
|
|
| T |
10412699 |
taaatattatgtatagaattcaatagtaataca |
10412667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 31467352 - 31467423
Alignment:
| Q |
222 |
tgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttag |
293 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
31467352 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag |
31467423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 31477204 - 31477270
Alignment:
| Q |
228 |
tgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttagg |
294 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| |||| ||| ||||| |||||||| |
|
|
| T |
31477204 |
tgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttagg |
31477270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 31502562 - 31502652
Alignment:
| Q |
222 |
tgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactaga |
312 |
Q |
| |
|
||||| ||||||||| |||||||||||||| | |||||||| ||||| |||||||| || || |||||||| | ||| ||||| ||||| |
|
|
| T |
31502562 |
tgcacatgaaagattggaggctttggagaaagtaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
31502652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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