View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_high_16 (Length: 334)
Name: NF8185_high_16
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 111 - 315
Target Start/End: Complemental strand, 40992221 - 40992003
Alignment:
| Q |
111 |
caataagagatctaattcccaactaaaatggttaagaaattaagatatctcagttgt--------------tttggcaaattttcannnnnnnnaaacat |
196 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
40992221 |
caataagagatcgaattcccaactaaaatggttaagaaattaagatatctcagttgtcaaaatataataggtttggcaaatttttattttttttaaacat |
40992122 |
T |
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| Q |
197 |
gtgaccaagtcaatccttgaccatgtagagtgtggcttgaatattttgcctcttcgtcacgtaactcatcccatccagatgtcgcctcaattgaattttc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40992121 |
gtgaccaagtcaatccttgaccatgtagagtgtggcttgaatattttgcctctttgtcacgtaactcatcccatccagatgtcgcctcaattgaattttc |
40992022 |
T |
|
| Q |
297 |
ctattatttatatttccac |
315 |
Q |
| |
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|||||||||| |||||||| |
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| T |
40992021 |
ctattatttacatttccac |
40992003 |
T |
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