View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_high_24 (Length: 274)
Name: NF8185_high_24
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 2868553 - 2868793
Alignment:
| Q |
10 |
attattcttgcaattttgctctatattcaacaaagattgggctattacaagctgagtcaggttctgacatttgggcagtataagcttcttcctactttta |
109 |
Q |
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| T |
2868553 |
attattcttgcaattttggtctatattcaacaaagattgggctatgacaagctgagtcaggttctgacatttgggcagtataagcttcttcctactttta |
2868652 |
T |
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| Q |
110 |
gatatgaatatgaaaggttggattctaagtcctttgaaactgaactagttccaggtatcaatggtggtggtgaaaataagaaagaacaagttgaggaaga |
209 |
Q |
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| T |
2868653 |
gatat------gaaaggttggattctaagtcctttgaaactgaactagttccaggtagcaatggtggtggtgaaaataagaaagaacaagttgatgaaga |
2868746 |
T |
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| Q |
210 |
atgaatgtagacactaatttgtgttactgacaaaaaactgttgtatt |
256 |
Q |
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| T |
2868747 |
atgaatgtagacactaatttgtgttactgacaaaaaactgctgtatt |
2868793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 25857176 - 25856938
Alignment:
| Q |
12 |
tattcttgcaattttgctctatattcaacaaagattgggctattacaagctgagtcaggttctgacatttgggcagtataagcttcttcctacttttaga |
111 |
Q |
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| T |
25857176 |
tattcttgcaattttggtctatattcaacaaagattgggctattacaagctgagtcaggttctgacatttgggcagtataagcttcttcctacttttaga |
25857077 |
T |
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| Q |
112 |
tatgaatatgaaaggttggattctaagtcctttgaaactgaactagttccaggtatcaatggtggtggtgaaaataagaaagaacaagttgaggaagaat |
211 |
Q |
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| T |
25857076 |
tatgaa------aggttgaattctaagtcctttgaaactgaacaagttccaggtatcaatggtggtggtgaaaataagaaagaacaagttgatgaagaat |
25856983 |
T |
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| Q |
212 |
gaatgtagacactaatttgtgttactgacaaaaaactgttgtatt |
256 |
Q |
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| T |
25856982 |
gaatgtagacactaatttgtgttacagacaaaaaactgttgtatt |
25856938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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