View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_high_28 (Length: 243)
Name: NF8185_high_28
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_high_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4878301 - 4878523
Alignment:
| Q |
21 |
agagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactgcatatgcacaaatttgcaaaatgctagaatacatttatcatgtaccggtg |
120 |
Q |
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| T |
4878301 |
agagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactgcatatgcacaaatttgcaaaatgctagaatacatttatcatgtaccggtg |
4878400 |
T |
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| Q |
121 |
tattcttttctatccactcttatatactagttcaatattttgtccgctaccgtgatctcgattccatgtacctatttatgattggaattaagtgtccaat |
220 |
Q |
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| T |
4878401 |
tattcttttctatccactcttatatactagttcaatattttgttcgctaccgtgatctcgattccatgtacctatttatgattggaattaagtttccaat |
4878500 |
T |
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| Q |
221 |
aaacagcttatgagggtatatgc |
243 |
Q |
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| T |
4878501 |
aaacagcttatgagggtatatgc |
4878523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 12534181 - 12534044
Alignment:
| Q |
23 |
agctacttgaaaagaaatctaaacattattctcaaaagccaaaaactgcatatgcacaaatttgcaaaatgctagaatacatttatcatgtaccggtgta |
122 |
Q |
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|||||| |||||| |||||| ||||| | ||| || ||| ||||| ||||||||||||||||||||||||| | |||||||||||| ||| ||| | || |
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| T |
12534181 |
agctacatgaaaacaaatctgaacataactcttaacagcaaaaaagtgcatatgcacaaatttgcaaaatggtggaatacatttattatggaccagaata |
12534082 |
T |
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| Q |
123 |
ttcttttctatccactcttatatactagttcaatattt |
160 |
Q |
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| T |
12534081 |
ttctattttatccattcttatatactaattcaatattt |
12534044 |
T |
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