View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_high_31 (Length: 207)
Name: NF8185_high_31
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 39917402 - 39917227
Alignment:
| Q |
15 |
agaataggaaagctgatattggtgccgcacagtccccaaaaggatggctatcttcatcaaactctctaaaaaagagatataattagccatagaataaagc |
114 |
Q |
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| T |
39917402 |
agaataggaaagctgatattggtgcc--acagtccccaaaaggatggctatcttcatcaaactctctaagaaagagatataattagccatagaataaagc |
39917305 |
T |
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| Q |
115 |
aaaatcaaat-nnnnnnnncgttaatactgagaagcaacatatgcagaaagaaattaaaggcgaaaaaacaaacttact |
192 |
Q |
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| T |
39917304 |
-aaatcaaataaaaaaaaacgttaatactgagaagcaacatatgcagaaagaaattaaaggcgaaaaaacaaacttact |
39917227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 39823428 - 39823324
Alignment:
| Q |
15 |
agaataggaaagctgatattggtgccgcacagtccccaaaaggatggctatcttcatcaaactctctaaaaaagagatataattagccatagaataaagc |
114 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
39823428 |
agaataggaaagctgatatcggtgcc--acagtccccaaaaggatggctatcttcatcaaactctctaagaaagagatgtaattagccctagaataaagc |
39823331 |
T |
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| Q |
115 |
aaaatca |
121 |
Q |
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||||||| |
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| T |
39823330 |
aaaatca |
39823324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 39908221 - 39908164
Alignment:
| Q |
135 |
ttaatactgagaagcaacatatgcagaaagaaattaaaggcgaaaaaacaaacttact |
192 |
Q |
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| T |
39908221 |
ttaatactgagaagcaacatatgctggaagaaattaaaggtgaaaaaacaaacttact |
39908164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 39823300 - 39823242
Alignment:
| Q |
133 |
cgttaatactgagaagcaacatatgcagaaagaaattaaaggcgaaaaaacaaacttact |
192 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39823300 |
cgttattactgcgaagcaacatatgcagaaagaaattaaaggcga-aaaacaaacttact |
39823242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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