View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_high_6 (Length: 516)
Name: NF8185_high_6
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 18714765 - 18714633
Alignment:
| Q |
1 |
gcaaccaagtataaccagtaatgattaataacaacaaaagttatgttaagcacagtggttgaaaatataaacaaattggaaagtatttcaaagagcatga |
100 |
Q |
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| T |
18714765 |
gcaaccaagtataactagtaatgattaatagcaacaaaagttatgttaagcacagtggttgacaataaaaacatattgggaagtatttcaaagagcatga |
18714666 |
T |
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| Q |
101 |
ttcatcattccaaataggtgtttaagcctaagt |
133 |
Q |
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| T |
18714665 |
ttcgtcattccaaatagctctttatgcctaagt |
18714633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 501
Target Start/End: Complemental strand, 18714353 - 18714277
Alignment:
| Q |
415 |
caaagtttaatattgcaagtacatcgtaacaaatcacgagtttattgaaataacaactttgattttctcagtttgaaggagtcaaat |
501 |
Q |
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| T |
18714353 |
caaagttgaatattgcaagtacatcgtaacaaatcacgagtt----------acaactttgattttctcagtttgaaggagtcaaat |
18714277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 18714609 - 18714527
Alignment:
| Q |
281 |
atgcatttaaccataaat-caatgagaccgtttcctatcttattatcaacccaacaagttgatgtaaaatggattctgacacctct |
365 |
Q |
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| T |
18714609 |
atgcatttaaccataaacgcaatgagaccatttcctatcttat---caaccctacaaactgatgtaaaatggatcccgacacctct |
18714527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 484
Target Start/End: Complemental strand, 14536200 - 14536139
Alignment:
| Q |
424 |
atattgcaagtacatcgtaacaaatcacgagtttattgaaataacaa-ctttgattttctca |
484 |
Q |
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| T |
14536200 |
atattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttctca |
14536139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 17816118 - 17816082
Alignment:
| Q |
436 |
catcgtaacaaatcacgagtttattgaaataacaact |
472 |
Q |
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| T |
17816118 |
catcataacaaaacacgagtttattgaaataacaact |
17816082 |
T |
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