View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8185_low_10 (Length: 458)

Name: NF8185_low_10
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8185_low_10
NF8185_low_10
[»] chr2 (6 HSPs)
chr2 (26-454)||(33414025-33414453)
chr2 (335-444)||(13549868-13549977)
chr2 (402-451)||(43627236-43627285)
chr2 (402-444)||(45421262-45421304)
chr2 (402-452)||(9949618-9949668)
chr2 (414-451)||(33547609-33547646)
[»] chr6 (5 HSPs)
chr6 (252-458)||(14528103-14528309)
chr6 (252-454)||(14532833-14533035)
chr6 (355-444)||(4406756-4406845)
chr6 (402-444)||(1682790-1682832)
chr6 (402-442)||(13755211-13755251)
[»] chr5 (4 HSPs)
chr5 (343-452)||(31862329-31862438)
chr5 (402-442)||(10487260-10487300)
chr5 (402-452)||(34480692-34480742)
chr5 (414-451)||(34858059-34858096)
[»] chr8 (3 HSPs)
chr8 (191-254)||(40439745-40439808)
chr8 (402-452)||(2871926-2871976)
chr8 (402-452)||(7452088-7452138)
[»] chr4 (9 HSPs)
chr4 (402-452)||(3130333-3130383)
chr4 (402-444)||(7663592-7663634)
chr4 (107-138)||(51203233-51203264)
chr4 (191-241)||(31063631-31063681)
chr4 (402-444)||(47540669-47540711)
chr4 (402-451)||(20673446-20673495)
chr4 (414-451)||(23873842-23873879)
chr4 (414-451)||(55298360-55298397)
chr4 (402-442)||(8655427-8655467)
[»] chr3 (6 HSPs)
chr3 (402-451)||(7146778-7146827)
chr3 (402-444)||(30167699-30167741)
chr3 (335-451)||(2813787-2813903)
chr3 (402-443)||(9378842-9378883)
chr3 (414-451)||(23601510-23601547)
chr3 (402-442)||(29309154-29309194)
[»] scaffold0418 (1 HSPs)
scaffold0418 (402-444)||(7419-7461)
[»] chr1 (9 HSPs)
chr1 (406-452)||(47116024-47116070)
chr1 (402-444)||(36305528-36305570)
chr1 (202-259)||(12967297-12967354)
chr1 (414-451)||(32353663-32353700)
chr1 (402-451)||(38231424-38231473)
chr1 (414-451)||(48073798-48073835)
chr1 (402-442)||(3692373-3692413)
chr1 (202-254)||(9001726-9001778)
chr1 (402-442)||(21527907-21527947)
[»] chr7 (4 HSPs)
chr7 (402-444)||(15654059-15654101)
chr7 (414-451)||(13439790-13439827)
chr7 (402-451)||(28327093-28327142)
chr7 (402-451)||(30385937-30385986)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 26 - 454
Target Start/End: Complemental strand, 33414453 - 33414025
Alignment:
Q  26 ctattatgaattcacagtacaataaactacttcattccttataaatataatgtatttgaaactgaaggttataaattatgattttcgtccctataaatat 125  Q
    |||||||||||||| || || |||||||||||||||| |||||||||||  | ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  33414453 ctattatgaattcataggacgataaactacttcattcgttataaatatagcgaatttgaaactgaaggttttaaattatgatattcgtccctataaatat 33414354  T
Q  126 tgcgaattttgatctatatttatagcgaattttttcatctctatattttaaaatatatttaattcttctgttaatctatgttttctataccattagtgaa 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  33414353 tgcgaattttgatctatatttatagcgaattttttcatctctatattttaacatatatttaactcttcttttaatctatgttttctataccattagtgaa 33414254  T
Q  226 agatattattgtaaaacaaatcacaattattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtgga 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  33414253 agatattattgtaaaacaaatcacaattattattatcgtgcactacctttgctactctatggtcgttagtgcgggactagattggtttttcggcggtgga 33414154  T
Q  326 ctcccaaattatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcc 425  Q
    |||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |     
T  33414153 ctcccagattatttccgatcatttcttgtagttttcacatttgacaagtagtgggaaagctcagcgctcgtttctacaacttatatggcttatttgtaca 33414054  T
Q  426 tgggttgtgtggaatgaacataataatat 454  Q
    ||| |||||||||||||||||||||||||    
T  33414053 tggattgtgtggaatgaacataataatat 33414025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 444
Target Start/End: Complemental strand, 13549977 - 13549868
Alignment:
Q  335 tatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtg 434  Q
    ||||||| ||||||| || |||||||| ||||||||| || ||||    |||  ||| || ||| | |||||||| || |||||||||||||||||||||    
T  13549977 tatttccgatcattttttacagtttactcatttgacaggtggtggtgttgctagacgttcttttatgcaacttatttggcttctttgtgcctgggttgtg 13549878  T
Q  435 tggaatgaac 444  Q
    ||||||||||    
T  13549877 tggaatgaac 13549868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 43627285 - 43627236
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  43627285 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataa 43627236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 45421304 - 45421262
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  45421304 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 45421262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 9949618 - 9949668
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 452  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| |||||||    
T  9949618 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataat 9949668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 33547646 - 33547609
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  33547646 cttctttgtgcctgggttgtttggaatgaacgtaataa 33547609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 252 - 458
Target Start/End: Complemental strand, 14528309 - 14528103
Alignment:
Q  252 ttattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtggactcccaaattatttccaatcatttct 351  Q
    ||||||||||| ||||||||||||||||||||| ||  |||||||| ||||||||||| ||||||| | |||||||| || ||||||||| |||||||||    
T  14528309 ttattattatcatgcactacctttgctactctacggcagttagtgcaggactggattgacttttcgtcagtggactctcagattatttccgatcatttct 14528210  T
Q  352 tgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    || |||||||||||| |||| |||||||||||||||||||||| ||||||||  ||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  14528209 tgtagtttacacattcgacaggtagtgggaaagctcaacgctcatttctacagtttatatggcttctttgtgccttggttgtgtggaatgaacgtaataa 14528110  T
Q  452 tatatta 458  Q
    |||||||    
T  14528109 tatatta 14528103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 252 - 454
Target Start/End: Complemental strand, 14533035 - 14532833
Alignment:
Q  252 ttattattatcgtgcactacctttgctactctatggtcgttagtgcgggactggattggcttttcggcggtggactcccaaattatttccaatcatttct 351  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||  |||||||||| || ||||||||| ||| |||||    
T  14533035 ttattattatcgtgcactacctttgctactctatggcagttagtgcaggactggattgacttttcatcggtggactctcagattatttccgatcctttct 14532936  T
Q  352 tgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    || |||||| | ||| |||| ||| |||||||| || |||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  14532935 tgtagtttatatattcgacaggtaatgggaaaggtcgacgctcatttctacagattatatgacttctttgtgccttggttgtgtggaatgaacgtaataa 14532836  T
Q  452 tat 454  Q
    |||    
T  14532835 tat 14532833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 444
Target Start/End: Complemental strand, 4406845 - 4406756
Alignment:
Q  355 agtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    ||||||| ||| ||| | || |||| ||||||  ||| |||||||| || || |||||||||||||||||||||||||||||||||||||    
T  4406845 agtttactcatatgataggtggtggtaaagctagacgttcgtttctgcagctaatatgacttctttgtgcctgggttgtgtggaatgaac 4406756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 1682832 - 1682790
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    |||||||| || ||||| |||||||||||||||||||||||||    
T  1682832 caacttatttggcttctctgtgcctgggttgtgtggaatgaac 1682790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 13755251 - 13755211
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatga 442  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  13755251 caactaatatgacttctatgtgtctgggttgtgtggaatga 13755211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 31862438 - 31862329
Alignment:
Q  343 atcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtgtggaatga 442  Q
    ||||||| ||||||||||| ||| ||||| || |||| ||||||  ||| || ||  | ||||| ||||| |||||||||| ||||||| ||||||||||    
T  31862438 atcatttattgcagtttactcatatgacaggtggtggcaaagctagacggtctttcatgcaactaatatggcttctttgtgtctgggttttgtggaatga 31862339  T
Q  443 acataataat 452  Q
    ||||||||||    
T  31862338 acataataat 31862329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 10487260 - 10487300
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatga 442  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  10487260 caacttatttggcttctttgtgcctgggttgtgtggaatga 10487300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 34480742 - 34480692
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 452  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| |||||||    
T  34480742 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataat 34480692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 34858059 - 34858096
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  34858059 cttctttgtgcctgggttgtttggaatgaacgtaataa 34858096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 40439808 - 40439745
Alignment:
Q  191 ttctgttaatctatgttttctataccattagtgaaagatattattgtaaaacaaatcacaatta 254  Q
    |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||||| |||||||||    
T  40439808 ttcttttaatttatgttttccataccattagtgaaggatatttttgtaaaacaactcacaatta 40439745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 2871976 - 2871926
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 452  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  2871976 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataat 2871926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 7452138 - 7452088
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 452  Q
    ||||||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  7452138 caacttatatggctactttgtgactgggttgtgtggaatgaacaaaataat 7452088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 3130333 - 3130383
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 452  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  3130333 caacttatttggcttctttgtgcctgggttgtgtggaatgaacaaaataat 3130383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 7663592 - 7663634
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  7663592 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 7663634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 138
Target Start/End: Original strand, 51203233 - 51203264
Alignment:
Q  107 ttttcgtccctataaatattgcgaattttgat 138  Q
    ||||||||||||||||||||||||||||||||    
T  51203233 ttttcgtccctataaatattgcgaattttgat 51203264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 31063631 - 31063681
Alignment:
Q  191 ttctgttaatctatgttttctataccattagtgaaagatattattgtaaaa 241  Q
    |||| ||||| ||||||||| |||||||||||||| |||||| ||||||||    
T  31063631 ttcttttaatttatgttttccataccattagtgaaggatatttttgtaaaa 31063681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 47540711 - 47540669
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    |||||||| || ||||| |||||||||||||||||||||||||    
T  47540711 caacttatttggcttctctgtgcctgggttgtgtggaatgaac 47540669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 20673495 - 20673446
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    ||||| ||||| ||||| ||||||| |||||| |||||||||||||||||    
T  20673495 caactaatatggcttctatgtgcctaggttgtttggaatgaacataataa 20673446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 23873842 - 23873879
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  23873842 cttctttgtgcctgggttgtttggaatgaacgtaataa 23873879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 55298397 - 55298360
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  55298397 cttctttgtgcctgggttgtttggaatgaacgtaataa 55298360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 8655427 - 8655467
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatga 442  Q
    |||||||| || ||||| |||||||||||||||||||||||    
T  8655427 caacttatttggcttctctgtgcctgggttgtgtggaatga 8655467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 7146827 - 7146778
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  7146827 caacttatatggcttctttgtgcctgggttgtttggaatgaacgtaataa 7146778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 30167699 - 30167741
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  30167699 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 30167741  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 451
Target Start/End: Original strand, 2813787 - 2813903
Alignment:
Q  335 tatttccaatcatttcttgcagtttacacatttgacaagtagtgggaaagctcaacgctcgtttctacaacttatatgacttctttgtgcctgggttgtg 434  Q
    |||||| |||||||| || ||||| || ||||||||| || ||||    |||  ||| |||||| | ||||| ||||||||||| ||||||||||| ||     
T  2813787 tatttcaaatcattttttacagttcactcatttgacaggtggtggtgttgctagacgttcgtttatgcaactaatatgacttctatgtgcctgggtagtc 2813886  T
Q  435 tggaatgaacataataa 451  Q
    |||||||||| ||||||    
T  2813887 tggaatgaacgtaataa 2813903  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 9378883 - 9378842
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaa 443  Q
    ||||| ||||||||||| |||||||||||||| |||||||||    
T  9378883 caactcatatgacttctgtgtgcctgggttgtttggaatgaa 9378842  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 23601547 - 23601510
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  23601547 cttctttgtgcctgggttgtttggaatgaacgtaataa 23601510  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 29309194 - 29309154
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatga 442  Q
    ||||| ||||||||||| |||| ||||||||||||||||||    
T  29309194 caactaatatgacttctatgtgtctgggttgtgtggaatga 29309154  T

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Target: scaffold0418 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 7461 - 7419
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  7461 caacttatatggcttctttgtgcatgggttgtgtggaatgaac 7419  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 47116070 - 47116024
Alignment:
Q  406 ttatatgacttctttgtgcctgggttgtgtggaatgaacataataat 452  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  47116070 ttatatgacttttttgtgcctgagttgtgtggaatgaacaaaataat 47116024  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 36305570 - 36305528
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    ||||||||||| || ||||||| ||||||||||||||||||||    
T  36305570 caacttatatggctactttgtgtctgggttgtgtggaatgaac 36305528  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 12967297 - 12967354
Alignment:
Q  202 tatgttttctataccattagtgaaagatattattgtaaaacaaatcacaattattatt 259  Q
    ||||||||| ||||||||| | || |||||| ||||||||||| ||||||||| ||||    
T  12967297 tatgttttccataccattaataaaggatatttttgtaaaacaactcacaattaatatt 12967354  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 32353663 - 32353700
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  32353663 cttctttgtgcctgggttgtttggaatgaacgtaataa 32353700  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 38231473 - 38231424
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    ||||| ||||||||||| |||||||| ||||| |||||||||| ||||||    
T  38231473 caactaatatgacttctatgtgcctgagttgtttggaatgaacgtaataa 38231424  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 48073798 - 48073835
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  48073798 cttctttgtgcctgggttgtttggaatgaacgtaataa 48073835  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 3692413 - 3692373
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatga 442  Q
    ||||| ||||| ||||| |||||||||||||||||||||||    
T  3692413 caactaatatggcttctatgtgcctgggttgtgtggaatga 3692373  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 9001726 - 9001778
Alignment:
Q  202 tatgttttctataccattagtgaaagatattattgtaaaacaaatcacaatta 254  Q
    ||||||||| ||| ||||| |||| |||||| ||||||||||| |||||||||    
T  9001726 tatgttttccatatcattaatgaatgatatttttgtaaaacaactcacaatta 9001778  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 21527947 - 21527907
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatga 442  Q
    |||||||| || ||||| |||||||||||||||||||||||    
T  21527947 caacttatttggcttctctgtgcctgggttgtgtggaatga 21527907  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 15654059 - 15654101
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaac 444  Q
    ||||||||||| ||||||||||| || ||||||||||||||||    
T  15654059 caacttatatggcttctttgtgcatgagttgtgtggaatgaac 15654101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 13439827 - 13439790
Alignment:
Q  414 cttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  13439827 cttctttgtgcctgggttgtttggaatgaacgtaataa 13439790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 28327142 - 28327093
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    |||||||| || ||||||||||| |||||||| |||||||||| ||||||    
T  28327142 caacttatttggcttctttgtgcttgggttgtttggaatgaacgtaataa 28327093  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 451
Target Start/End: Complemental strand, 30385986 - 30385937
Alignment:
Q  402 caacttatatgacttctttgtgcctgggttgtgtggaatgaacataataa 451  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||| ||||||    
T  30385986 caacttatatggcttctatgtgtctgggttgtttggaatgaacgtaataa 30385937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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