View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_13 (Length: 398)
Name: NF8185_low_13
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Original strand, 42933364 - 42933742
Alignment:
| Q |
14 |
gtttggtgttggtaaaatcaccaacatgatcaagaatgttccacctcatcttagagatcatactatgagttctattatttttcaatctgatatgcgtgct |
113 |
Q |
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| T |
42933364 |
gtttggtgttggtaaaatcaccaatatgatcaagaatgttccacctcatcttagagatcataccatgagttctattatttttcaatctgatatgcgtgct |
42933463 |
T |
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| Q |
114 |
atggatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcattttacacgtcaacaaatttcta |
213 |
Q |
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| T |
42933464 |
atggatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatcttacacgtcaacaaatttcta |
42933563 |
T |
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| Q |
214 |
tttgtaaagctacacaatca---------caacaacaatttgcctctgtggctaatcatcattataatgacatgcatgtcattaatcataacaataacga |
304 |
Q |
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| T |
42933564 |
tttgtaaagctacacaatcacaacaacatcaacaacaatttgccgctgtgtctaatcatcattataatgacatgcatgtcattaatcataacaataacga |
42933663 |
T |
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| Q |
305 |
ggataatgatgctgctttgaatattatcaatcattttaaccagcagcattttgttgatgatcaactgaatatgaatatg |
383 |
Q |
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| T |
42933664 |
ggataatgatgctgctttgaatattatcaatcattttaaccagcagcattttgttgatgatcaactgaatatgaatatg |
42933742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 5747366 - 5747292
Alignment:
| Q |
90 |
atttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaa |
164 |
Q |
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| T |
5747366 |
atttttcaatctgatatgcgggctaatgatcctgttggtggttgttataaatatattcaagatcttcaagctcaa |
5747292 |
T |
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