View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8185_low_14 (Length: 388)
Name: NF8185_low_14
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 224 - 384
Target Start/End: Complemental strand, 19689298 - 19689138
Alignment:
| Q |
224 |
ccaattcagtcgattccaattcttgttattttcattgtcgtgcccattcaaaatccgaatctttattaatttctattgctgctcaattccaattgcaagg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19689298 |
ccaattcagtcgattccaattcttgttattttcattgtcgtgcccattcaaaatccgaatctttattaatttctattgctgctcaattccaattgcaagg |
19689199 |
T |
|
| Q |
324 |
aagattctagccgtggcaattctcttgaattaaagtatccatcttaacacaggttctgctc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
19689198 |
aagattctagccgtggcaattctcttgaattaaagtatccatcttaacacagcttcggctc |
19689138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 19689515 - 19689364
Alignment:
| Q |
7 |
tttggtgtttaaccttaacattcttcttttaatatttctactatattactttacgattaatcttcatttgaaataaagagttctagtcttattttattat |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19689515 |
tttggtgtttaaccttaaccttcttcttttaatatttctactatattactttacgattaatcttcatttgaaataaagagttctagtcttattttattat |
19689416 |
T |
|
| Q |
107 |
tttcttttgaaatcgcttgctaatgtatggnnnnnnnacgattcagaaactg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19689415 |
tttcttttgaaatcgcttgctaatgtatggtttttttacgattcagaaactg |
19689364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University