View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_15 (Length: 387)
Name: NF8185_low_15
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 40676757 - 40676383
Alignment:
| Q |
10 |
attattctccaacactcatattgtctttgaatagatgacacataccatgttgctcctaaaacctgcactgacaaacacagcacataacacacaagttaac |
109 |
Q |
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| T |
40676757 |
attattctccaacactcatattgtctttgaatagatgacacataccatgttgctcctaaaacctgcactgacaaacacaacacataacacacaagttaac |
40676658 |
T |
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| Q |
110 |
tattatcaaaacattgtagtaattaaatttgatactgttaaataattacatggctggccagcatgtagaaaccaagattgtacaatgcccctgctaaagc |
209 |
Q |
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| T |
40676657 |
tattatcaaaacattgtagtaattaaatttgatactgttaaataattacatggctggccagcatgtagaaaccaagattgtacaatgcccctgctaaagc |
40676558 |
T |
|
| Q |
210 |
agttttggctataaggccgctagtctttaagattcgacgttgtaaaggaaaaatctgaaaacatctaggaatgaactgaatgagaactattagggacaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40676557 |
agttttggctataaggccgctagtctttaagattcgacgttgtaaaggaaaaatctgaaaacatctaggaatgaactgaatgagaactattagggacaat |
40676458 |
T |
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| Q |
310 |
gtgtggtttacatgagctgcatttgagttctttgtagctggaatcacaacccaaatgactatctgaaattggagg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40676457 |
gtgtggtttacatgagctgcatttgagttctttgtagctggaatcacaacccaaatgactatctgaaattggagg |
40676383 |
T |
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