View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_17 (Length: 353)
Name: NF8185_low_17
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 39295961 - 39295626
Alignment:
| Q |
1 |
tatgcaaaccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataatcgacaacctcaaattttttgttggtatgtcagactttggtagt |
100 |
Q |
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| T |
39295961 |
tatgcaaaccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataatcgacaacctcgaattttttgttggtatgtcagactttggtagt |
39295862 |
T |
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| Q |
101 |
acctcaactctctcttggttattttccatgtcctgaatttcagctagaaattcatactcatcatcgtcagcatcaatgttgatgtcacagaagtgactac |
200 |
Q |
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| T |
39295861 |
acctcaactttctcttggttattttccatgtcctgaacttgagctagaaattcatactcatcatcgtcagcatcaatgttgatgtcacagaagtgactac |
39295762 |
T |
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| Q |
201 |
tagctcgactttgagtcctagttgaactaatagcttgagaattgtttcttgtccatggaggaatccaaagccatgttcctgctttctctgtctttgttgt |
300 |
Q |
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| T |
39295761 |
tagctcgactttgagtcctagttgaactaatagcttgagaattgtttcttgtccatggaggaatccaaagccatgttcctgctttctctgtctttgttgt |
39295662 |
T |
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| Q |
301 |
tgattcaattgcaaaagggctgcttttgttaggatt |
336 |
Q |
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| T |
39295661 |
tgattcaattgcaaaagggctgcttttgttaggatt |
39295626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 39289078 - 39288869
Alignment:
| Q |
1 |
tatgcaaaccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataatcgacaacctcaaattttttgttggtatgtcagactttggtagt |
100 |
Q |
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| T |
39289078 |
tatgcaaaccaagaatagtcctttgtaaactgtgaaaccttgatctagcagaataatagacaaccttgacttcctttttggtggttctgtttttggtagt |
39288979 |
T |
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| Q |
101 |
acctcaactctctcttggttattttccatgtcctgaatttcagctagaaattcatactcatcatcgtcagcatcaatgttgatgtcacagaagtgactac |
200 |
Q |
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| T |
39288978 |
accttaactttttcttggttattttctatgtcttgaacttcagctagaaattcatactcaacatcatcagcatcaatgttgatgtcacaaaaatgactac |
39288879 |
T |
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| Q |
201 |
tagctcgact |
210 |
Q |
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| T |
39288878 |
ttgctcgact |
39288869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 39288826 - 39288731
Alignment:
| Q |
238 |
agaattgtttcttgtccatggaggaatccaaagccatgttcctgctttctctgtctttgttgttgattcaattgcaaaagggctgcttttgttaggatt |
336 |
Q |
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| T |
39288826 |
agaattgtttcttgtcc---gaggaatccaaagccatgttccagttctctctggctttgttggtgattcaattgcaaaagggcttcttctgttaggatt |
39288731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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