View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_18 (Length: 348)
Name: NF8185_low_18
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 39296337 - 39296000
Alignment:
| Q |
11 |
aagcagagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaac |
110 |
Q |
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| T |
39296337 |
aagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaac |
39296238 |
T |
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| Q |
111 |
aagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaaga |
210 |
Q |
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| T |
39296237 |
gagagaatatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaaga |
39296138 |
T |
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| Q |
211 |
gaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagaatgttaccaatgg |
310 |
Q |
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| T |
39296137 |
gaaacacaaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaggatgttaccaatgg |
39296038 |
T |
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| Q |
311 |
agaaaagtgtagctcttgatttaccatatggaaaatgc |
348 |
Q |
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| T |
39296037 |
agaaaagtgtagctcttgatttaccatatggaaaatgc |
39296000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 39289449 - 39289117
Alignment:
| Q |
19 |
agcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaagag |
115 |
Q |
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| T |
39289449 |
agcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgagag |
39289350 |
T |
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| Q |
116 |
aataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgttttgattctaagagaaac |
215 |
Q |
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| T |
39289349 |
aataaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctgttttgattctaagagaaac |
39289250 |
T |
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| Q |
216 |
acaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagaatgttaccaatggagaaa |
315 |
Q |
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| T |
39289249 |
acaaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctagaatgttaccaatggagaaa |
39289150 |
T |
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| Q |
316 |
agtgtagctcttgatttaccatatggaaaatgc |
348 |
Q |
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| T |
39289149 |
agtgtagctcttgatttaccatatggaaaatgc |
39289117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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