View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8185_low_21 (Length: 331)
Name: NF8185_low_21
Description: NF8185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8185_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 14073512 - 14073828
Alignment:
| Q |
1 |
gaagaaaaatatagctggtaccaattttttaagaatatttgaatgagacagctaaaaatctctttcaacttagtggatgtttagtttagaatggtgtttc |
100 |
Q |
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| T |
14073512 |
gaagaaaaatatagctggtaccaattttttaagaatatttgaatgagacagcgaaaaatctctttcaacttagtggatgtttagtttagaatggtgtttc |
14073611 |
T |
|
| Q |
101 |
atgaagcaaaaacacatctgtatgttatttgatgtaaatcttctatgattttaagaagatgagaattgtagtttcta---taaagtgattttttgatgtg |
197 |
Q |
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| T |
14073612 |
atgaagcaaaaacacatatgtatgttatttgatgtaaatcttctatgattttaagaagctaaaaattgtaatttctacgttaaagtggtttttt-atgtg |
14073710 |
T |
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| Q |
198 |
atttttaacaaaatgtgatttccaaccatccatcgaaacagacacttagttgtaagtgttaaatttaaatttagtttgtgaatgaaatcatgttaaatct |
297 |
Q |
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| T |
14073711 |
atttttaaaaaaacgtgatttccaaccgtccatcgaaacagacacttagttgtaagtgttaaatttgaatttagtttgtgaatgaaaccatgttaaatct |
14073810 |
T |
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| Q |
298 |
tttattttgtcacctatt |
315 |
Q |
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| T |
14073811 |
tttattttgtcacctatt |
14073828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 33209045 - 33209085
Alignment:
| Q |
178 |
taaagtgattttttgatgtgatttttaacaaaatgtgattt |
218 |
Q |
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| T |
33209045 |
taaagtggttttttgctgtgatttttaacaaaatgtgattt |
33209085 |
T |
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